Package: BridgeDbR 2.17.1

Egon Willighagen

BridgeDbR: Code for using BridgeDb identifier mapping framework from within R

Use BridgeDb functions and load identifier mapping databases in R. It uses GitHub, Zenodo, and Figshare if you use this package to download identifier mappings files.

Authors:Christ Leemans <[email protected]>, Egon Willighagen <[email protected]>, Denise Slenter, Anwesha Bohler <[email protected]>, Lars Eijssen <[email protected]>, Tooba Abbassi-Daloii

BridgeDbR_2.17.1.tar.gz
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BridgeDbR_2.17.1.tgz(r-4.4-any)BridgeDbR_2.17.1.tgz(r-4.3-any)
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BridgeDbR.pdf |BridgeDbR.html✨
BridgeDbR/json (API)
NEWS

# Install 'BridgeDbR' in R:
install.packages('BridgeDbR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/bridgedb/bridgedbr/issues

Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT

On BioConductor:BridgeDbR-2.17.1(bioc 3.21)BridgeDbR-2.16.0(bioc 3.20)

softwareannotationmetabolomicscheminformaticsbioconductor-packagebridgedbgenesidentifierslife-sciencesmetabolitesproteinsopenjdk

6.97 score 4 stars 43 scripts 230 downloads 4 mentions 16 exports 2 dependencies

Last updated 2 months agofrom:ec6e592a9e. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 07 2024
R-4.5-winOKDec 07 2024
R-4.5-linuxOKDec 07 2024
R-4.4-winOKDec 07 2024
R-4.4-macOKDec 07 2024
R-4.3-winOKDec 07 2024
R-4.3-macOKDec 07 2024

Exports:fullNameExistsgetAttributesgetBridgeNamesgetDatabasegetDataSourcegetFullNamegetMatchingSourcesgetOrganismCodegetPropertiesgetSystemCodeloadDatabasemapmapsregisterDataSourcesystemCodeExistsxrefExists

Dependencies:curlrJava

BridgeDbR Tutorial

Egon Willighagen

Rendered fromtutorial.Rmdusingknitr::rmarkdownon Dec 07 2024.

Last update: 2024-11-06
Started: 2018-03-10