Package: BP4RNAseq 1.23.0
BP4RNAseq: A babysitter's package for reproducible RNA-seq analysis
An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. The package can process bulk RNA-seq data and single-cell RNA-seq data. You can only provide the taxa name and the accession id of RNA-seq data deposited in the National Center for Biotechnology Information (NCBI). After a cup of tea or longer, you will get formated gene expression data as gene count and transcript count based on both alignment-based and alignment-free workflows.
Authors:
BP4RNAseq_1.23.0.tar.gz
BP4RNAseq_1.23.0.zip(r-4.7-any)BP4RNAseq_1.23.0.zip(r-4.6-any)BP4RNAseq_1.23.0.zip(r-4.5-any)
BP4RNAseq_1.23.0.tgz(r-4.6-any)BP4RNAseq_1.23.0.tgz(r-4.5-any)
BP4RNAseq_1.23.0.tar.gz(r-4.7-any)BP4RNAseq_1.23.0.tar.gz(r-4.6-any)
BP4RNAseq_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
BP4RNAseq/json (API)
| # Install 'BP4RNAseq' in R: |
| install.packages('BP4RNAseq', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:BP4RNAseq-1.23.0(workflows 3.24)BP4RNAseq-1.22.0(workflows 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:c76cfd2328. Checks:1 WARNING, 7 ERROR, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 149 | ||
| linux-devel | ERROR | 279 | ||
| source / vignettes | OK | 183 | ||
| linux-release | ERROR | 308 | ||
| macos-release | ERROR | 149 | ||
| macos-oldrel | ERROR | 129 | ||
| windows-devel | ERROR | 65 | ||
| windows-release | ERROR | 79 | ||
| windows-oldrel | ERROR | 89 | ||
| wasm-release | OK | 119 |
Exports:adapter_trimalign_based_quanalign_free_quanaveragecheck_depdown_Refdown2quanfastq2quanqc_testquality_trimscRNA_quansra_downloadsra2fastq
Dependencies:askpassbase64encbitbit64bslibcachemclicliprcpp11crayoncurldigestdplyrevaluatefarverfastmapfastqcrfontawesomefsgenericsggplot2gluegridExtragtableherehighrhmshtmltoolshttrisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrMatrixmemoisemimeopensslpillarpkgconfigpngprettyunitsprogresspurrrR6rappdirsRColorBrewerRcppRcppTOMLreadrreticulaterlangrmarkdownrprojrootrvestS7sassscalesselectrstringistringrsystibbletidyrtidyselecttinytextzdbutf8vctrsviridisLitevroomwithrxfunxml2yaml
