{ "_id": "6ac65fdcca1b382b34ef3c61", "Package": "BP4RNAseq", "Type": "Package", "Title": "A babysitter's package for reproducible RNA-seq analysis", "Version": "1.23.0", "Authors@R": "c(person(given = \"Shanwen\",\nfamily = \"Sun\",\nrole = c(\"cre\", \"aut\"),\nemail = \"sunshanwen@gmail.com\"),\nperson(given = \"Lei\",\nfamily = \"Xu\",\nrole = \"aut\"),\nperson(given = \"Quan\",\nfamily = \"Zou\",\nrole = \"aut\"))", "Description": "An automated pipe for reproducible RNA-seq analysis with\nthe minimal efforts from researchers. The package can process\nbulk RNA-seq data and single-cell RNA-seq data. You can only\nprovide the taxa name and the accession id of RNA-seq data\ndeposited in the National Center for Biotechnology Information\n(NCBI). After a cup of tea or longer, you will get formated\ngene expression data as gene count and transcript count based\non both alignment-based and alignment-free workflows.", "License": "GPL-2", "Encoding": "UTF-8", "SystemRequirements": "UNIX, SRA Toolkit=2.10.3, Entrez Direct=13.3,\nFastQC=v0.11.9, Cutadapt=2.10, datasets, SAMtools=1.9,\nHISAT2=2.2.0, StringTie=2.1.1, Salmon=1.2.1", "RoxygenNote": "7.1.1", "biocViews": "GeneExpressionWorkflow", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake make libicu-dev libpng-dev libuv1-dev\nlibxml2-dev libssl-dev python3 libx11-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:44:47 UTC", "RemoteUrl": "https://github.com/bioc/BP4RNAseq", "RemoteRef": "HEAD", "RemoteSha": "c76cfd2328b23530eccd220b19e28865d84a49d6", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-07 14:21:19 UTC", "User": "root" }, "Author": "Shanwen Sun [cre, aut],\nLei Xu [aut],\nQuan Zou [aut]", "Maintainer": "Shanwen Sun ", 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