Package: ArrayExpress 1.67.0

Jose Marugan

ArrayExpress: Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet.

Authors:Audrey Kauffmann, Ibrahim Emam, Michael Schubert, Jose Marugan

ArrayExpress_1.67.0.tar.gz
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ArrayExpress.pdf |ArrayExpress.html✨
ArrayExpress/json (API)
NEWS

# Install 'ArrayExpress' in R:
install.packages('ArrayExpress', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:ArrayExpress-1.65.0(bioc 3.21)ArrayExpress-1.66.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarraydataimportonechanneltwochannel

5.88 score 1 packages 125 scripts 864 downloads 2.0k mentions 8 exports 58 dependencies

Last updated 24 days agofrom:2b97e7e760. Checks:OK: 2 ERROR: 5. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 19 2024
R-4.5-winERRORNov 19 2024
R-4.5-linuxOKNov 19 2024
R-4.4-winERRORNov 19 2024
R-4.4-macERRORNov 19 2024
R-4.3-winERRORNov 19 2024
R-4.3-macERRORNov 19 2024

Exports:ae2biocArrayExpressextract.zipgetAEgetcolprocgetcolrawprocsetqueryAE

Dependencies:abindaffxparseraffyioaskpassBiobaseBiocGenericsBiocManagerBiostringsbitbit64blobcachemclicodetoolscpp11crayoncurlDBIDelayedArrayfastmapffforeachgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesiteratorsjsonlitelatticelifecyclelimmaMatrixMatrixGenericsmatrixStatsmemoisemimeoligooligoClassesopensslpkgconfigplogrpreprocessCoreR6rlangRSQLiteS4ArraysS4VectorsSparseArraystatmodSummarizedExperimentsysUCSC.utilsvctrsXVectorzlibbioc

ArrayExpress: Import and convert ArrayExpress data sets into R object

Rendered fromArrayExpress.Rnwusingutils::Sweaveon Nov 19 2024.

Last update: 2023-03-16
Started: 2013-11-01