{
  "_id": "6ad5feba6b811b735aabe0f2",
  "Package": "ArrayExpress",
  "Title": "Access the ArrayExpress Collection at EMBL-EBI Biostudies and\nbuild Bioconductor data structures: ExpressionSet, AffyBatch,\nNChannelSet",
  "Version": "1.73.0",
  "Author": "Audrey Kauffmann, Ibrahim Emam, Michael Schubert, Jose Marugan",
  "Maintainer": "Jose Marugan <jcmarca@ebi.ac.uk>",
  "Description": "Access the ArrayExpress Collection at EMBL-EBI Biostudies\nand build Bioconductor data structures: ExpressionSet,\nAffyBatch, NChannelSet.",
  "License": "Artistic-2.0",
  "biocViews": "Microarray, DataImport, OneChannel, TwoChannel",
  "NeedsCompilation": "no",
  "Config/pak/sysreqs": "libssl-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:33:15 UTC",
  "RemoteUrl": "https://github.com/bioc/ArrayExpress",
  "RemoteRef": "HEAD",
  "RemoteSha": "59e252288e4a139f613775cbdaac61ee2de48f27",
  "Packaged": {
    "Date": "2026-10-19 11:15:40 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "ArrayExpress_1.73.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/6e82f6a75f4a5d38e36d25162e067fa7e64e9c1f65598cf564a3776b58349e63",
  "_filesize": 245544,
  "_sha256": "6e82f6a75f4a5d38e36d25162e067fa7e64e9c1f65598cf564a3776b58349e63",
  "_expires": "2027-01-27T11:27:52.000Z",
  "_created": "2026-10-19T11:15:40.000Z",
  "_published": "2026-10-19T11:27:54.749Z",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/39242014593",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_bioccheck": {
    "error": 2,
    "warning": 6,
    "note": 13
  },
  "_upstream": "https://github.com/bioc/ArrayExpress",
  "_commit": {
    "id": "59e252288e4a139f613775cbdaac61ee2de48f27",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379595
  },
  "_maintainer": {
    "name": "Jose Marugan",
    "email": "jcmarca@ebi.ac.uk",
    "login": "jcmarca",
    "description": "",
    "uuid": 12399344
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 118029508251,
      "time": 151,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "12182004197"
    },
    {
      "job": 118029508101,
      "time": 604,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12183295970"
    },
    {
      "job": 118029508270,
      "time": 668,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12182866043"
    },
    {
      "job": 118029508341,
      "time": 614,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12183240501"
    },
    {
      "job": 118029508286,
      "time": 448,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12182741072"
    },
    {
      "job": 118024989575,
      "time": 671,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12182198376"
    },
    {
      "job": 118029508155,
      "time": 111,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12182247116"
    },
    {
      "job": 118029508229,
      "time": 643,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12182746531"
    },
    {
      "job": 118029508275,
      "time": 601,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12183415786"
    },
    {
      "job": 118029508384,
      "time": 466,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12182497554"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.9.0",
      "role": "Depends"
    },
    {
      "package": "Biobase",
      "version": ">= 2.4.0",
      "role": "Depends"
    },
    {
      "package": "oligo",
      "role": "Imports"
    },
    {
      "package": "limma",
      "role": "Imports"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "affy",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 2,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.73.0",
      "bioc": "3.24",
      "repository": "bioc"
    },
    {
      "branch": "release",
      "version": "1.72.0",
      "bioc": "3.23",
      "repository": "bioc"
    }
  ],
  "_topics": [
    "microarray",
    "dataimport",
    "onechannel",
    "twochannel"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 478,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 1099,
    "source": "https://www.bioconductor.org/packages/stats/bioc/ArrayExpress"
  },
  "_mentions": 1962,
  "_searchresults": 181,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/ArrayExpress.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "ae2bioc",
    "ArrayExpress",
    "extract.zip",
    "getAE",
    "getcolproc",
    "getcolraw",
    "procset",
    "queryAE"
  ],
  "_help": [
    {
      "page": "ae2bioc",
      "title": "Convert MAGE-TAB files from raw data into a Bioconductor object",
      "topics": [
        "ae2bioc"
      ]
    },
    {
      "page": "ArrayExpress",
      "title": "R objects from ArrayExpress collection",
      "topics": [
        "ArrayExpress"
      ]
    },
    {
      "page": "extract.zip",
      "title": "Unzip archives in a specified directory",
      "topics": [
        "extract.zip"
      ]
    },
    {
      "page": "getAE",
      "title": "Download MAGE-TAB files from the ArrayExpress collection in a specified directory",
      "topics": [
        "getAE"
      ]
    },
    {
      "page": "getcolproc",
      "title": "Return the possible column names from processed MAGE-TAB files",
      "topics": [
        "getcolproc"
      ]
    },
    {
      "page": "getcolraw",
      "title": "Return the possible column names from raw MAGE-TAB files",
      "topics": [
        "getcolraw"
      ]
    },
    {
      "page": "procset",
      "title": "Convert processed MAGE-TAB files into a Bioconductor object",
      "topics": [
        "procset"
      ]
    },
    {
      "page": "queryAE",
      "title": "Query of the ArrayExpress collection in Biostudies",
      "topics": [
        "queryAE"
      ]
    }
  ],
  "_rundeps": [
    "abind",
    "affxparser",
    "affyio",
    "askpass",
    "Biobase",
    "BiocGenerics",
    "BiocManager",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "codetools",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "DelayedArray",
    "fastmap",
    "ff",
    "foreach",
    "generics",
    "GenomicRanges",
    "glue",
    "httr",
    "IRanges",
    "iterators",
    "jsonlite",
    "lattice",
    "lifecycle",
    "limma",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "mime",
    "oligo",
    "oligoClasses",
    "openssl",
    "pkgconfig",
    "preprocessCore",
    "R6",
    "rlang",
    "RSQLite",
    "S4Arrays",
    "S4Vectors",
    "Seqinfo",
    "SparseArray",
    "statmod",
    "SummarizedExperiment",
    "sys",
    "vctrs",
    "XVector"
  ],
  "_vignettes": [
    {
      "source": "ArrayExpress.Rnw",
      "filename": "ArrayExpress.pdf",
      "title": "ArrayExpress: Import and convert ArrayExpress data sets into R object",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-11-01 20:05:38",
      "modified": "2023-03-16 11:34:59",
      "commits": 4
    }
  ],
  "_score": 6.377857513340301,
  "_indexed": true,
  "_nocasepkg": "arrayexpress",
  "_universes": [
    "bioc",
    "jcmarca"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.73.0",
      "date": "2026-10-19T11:19:39.000Z",
      "distro": "resolute",
      "commit": "59e252288e4a139f613775cbdaac61ee2de48f27",
      "fileid": "https://r2.ropensci.org/e5117e3a3feec29f049a3efef14bc87d5f2f0ef549190157a80829f14e8037ea",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39242014593"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.73.0",
      "date": "2026-10-19T11:19:10.000Z",
      "distro": "resolute",
      "commit": "59e252288e4a139f613775cbdaac61ee2de48f27",
      "fileid": "https://r2.ropensci.org/91a11c51f1e0143efbaf405bb0477c65ac9b759dbfce42af2b3c13f79c281562",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39242014593"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.73.0",
      "date": "2026-10-19T11:17:46.000Z",
      "commit": "59e252288e4a139f613775cbdaac61ee2de48f27",
      "fileid": "https://r2.ropensci.org/ab0772568183b97be28d4ac7f63be58e17bd3ff3afcb0b03dc7437ba1e85d7be",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39242014593"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.73.0",
      "date": "2026-10-19T11:17:26.000Z",
      "commit": "59e252288e4a139f613775cbdaac61ee2de48f27",
      "fileid": "https://r2.ropensci.org/a62489a2c519af9fb473fe40fb486c369769e581f79824ac70149849504e9b1b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39242014593"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.73.0",
      "date": "2026-10-19T11:18:07.000Z",
      "commit": "59e252288e4a139f613775cbdaac61ee2de48f27",
      "fileid": "https://r2.ropensci.org/af9c723d20de2ac4d578242313c248a7fcba929fd7a4b01b4c887b317b215a8d",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39242014593"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.73.0",
      "date": "2026-10-19T11:17:15.000Z",
      "commit": "59e252288e4a139f613775cbdaac61ee2de48f27",
      "fileid": "https://r2.ropensci.org/44cf2251d0dd807b7d1f1eead54de12b34b35bd17bf7c94a638d3d3497922d8a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39242014593"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.73.0",
      "date": "2026-10-19T11:17:18.000Z",
      "commit": "59e252288e4a139f613775cbdaac61ee2de48f27",
      "fileid": "https://r2.ropensci.org/b05f33c727e68c554a4ea16d113f8cc26d8d2de37b6a78caf325cef64b875187",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39242014593"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.73.0",
      "date": "2026-10-19T11:17:15.000Z",
      "commit": "59e252288e4a139f613775cbdaac61ee2de48f27",
      "fileid": "https://r2.ropensci.org/f7972e52ec1915d72a1f5667cd5ec375cf219aaef875139bc715a0eb0ccc668c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39242014593"
    }
  ]
}