Package: AnnotationFilter 1.37.0

Bioconductor Package Maintainer

AnnotationFilter: Facilities for Filtering Bioconductor Annotation Resources

This package provides class and other infrastructure to implement filters for manipulating Bioconductor annotation resources. The filters will be used by ensembldb, Organism.dplyr, and other packages.

Authors:Martin Morgan [aut], Johannes Rainer [aut], Joachim Bargsten [ctb], Daniel Van Twisk [ctb], Bioconductor Package Maintainer [cre]

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manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
AnnotationFilter/json (API)

# Install 'AnnotationFilter' in R:

install.packages('AnnotationFilter', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bioconductor/annotationfilter/issues

On BioConductor:AnnotationFilter-1.37.0(bioc 3.24)AnnotationFilter-1.36.0(bioc 3.23)

annotation infrastructure software bioconductor-package core-package

9.16 score 5 stars 174 packages 69 scripts 1 mentions 37 exports 8 dependencies

Last updated from:c5f7fe1117. Checks:1 ERROR, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	180
linux-devel-x86_64	OK	210
source / vignettes	OK	222
linux-release-x86_64	OK	204
macos-release-arm64	OK	113
macos-oldrel-arm64	OK	176
windows-devel	OK	249
windows-release	OK	253
windows-oldrel	OK	365
wasm-release	OK	132

Exports:AnnotationFilter AnnotationFilterList CdsEndFilter CdsStartFilter condition convertFilter distributeNegation EntrezFilter ExonEndFilter ExonIdFilter ExonNameFilter ExonRankFilter ExonStartFilter feature field GeneBiotypeFilter GeneEndFilter GeneIdFilter GenenameFilter GeneNameFilter GeneStartFilter GRangesFilter logicOp not ProteinIdFilter SeqNameFilter SeqStrandFilter show supportedFilters SymbolFilter TxBiotypeFilter TxEndFilter TxIdFilter TxNameFilter TxStartFilter UniprotFilter value

Dependencies:BiocGenerics generics GenomicRanges IRanges lazyeval rlang S4Vectors Seqinfo

Facilities for Filtering Bioconductor Annotation Resources

Introduction | Filter classes | Usage | Using AnnotationFilter in other packages | Session information

Rendered fromAnnotationFilter.Rmdusingknitr::rmarkdown

Last update: 2018-06-12
Started: 2017-07-27

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Filters for annotation objects	.GRangesFilter AnnotationFilter AnnotationFilter-class CdsEndFilter CdsEndFilter-class CdsStartFilter CdsStartFilter-class CharacterFilter-class condition condition,AnnotationFilter-method convertFilter,AnnotationFilter,missing-method DoubleFilter-class EntrezFilter EntrezFilter-class ExonEndFilter ExonEndFilter-class ExonIdFilter ExonIdFilter-class ExonNameFilter ExonNameFilter-class ExonRankFilter ExonRankFilter-class ExonStartFilter ExonStartFilter-class feature field field,AnnotationFilter-method GeneBiotypeFilter GeneBiotypeFilter-class GeneEndFilter GeneEndFilter-class GeneIdFilter GeneIdFilter-class GeneNameFilter GeneNameFilter-class GeneStartFilter GeneStartFilter-class GRangesFilter GRangesFilter-class IntegerFilter-class not,AnnotationFilter-method ProteinIdFilter ProteinIdFilter-class SeqNameFilter SeqNameFilter-class SeqStrandFilter SeqStrandFilter-class show,AnnotationFilter-method show,CharacterFilter-method show,DoubleFilter-method show,GRangesFilter-method show,IntegerFilter-method supportedFilters supportedFilters,missing-method SymbolFilter SymbolFilter-class TxBiotypeFilter TxBiotypeFilter-class TxEndFilter TxEndFilter-class TxIdFilter TxIdFilter-class TxNameFilter TxNameFilter-class TxStartFilter TxStartFilter-class UniprotFilter UniprotFilter-class value value,AnnotationFilter-method
Combining annotation filters	AnnotationFilterList AnnotationFilterList-class convertFilter convertFilter,AnnotationFilterList,missing-method distributeNegation distributeNegation,AnnotationFilterList-method logicOp logicOp,AnnotationFilterList-method not not,AnnotationFilterList-method show,AnnotationFilterList-method value,AnnotationFilterList-method
DEPRECATED Gene name filter	GenenameFilter GenenameFilter-class