Package: AnnotationFilter 1.29.0

Bioconductor Package Maintainer

AnnotationFilter: Facilities for Filtering Bioconductor Annotation Resources

This package provides class and other infrastructure to implement filters for manipulating Bioconductor annotation resources. The filters will be used by ensembldb, Organism.dplyr, and other packages.

Authors:Martin Morgan [aut], Johannes Rainer [aut], Joachim Bargsten [ctb], Daniel Van Twisk [ctb], Bioconductor Package Maintainer [cre]

AnnotationFilter_1.29.0.tar.gz
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AnnotationFilter.pdf |AnnotationFilter.html✨
AnnotationFilter/json (API)
NEWS

# Install 'AnnotationFilter' in R:
install.packages('AnnotationFilter', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/bioconductor/annotationfilter/issues

On BioConductor:AnnotationFilter-1.29.0(bioc 3.20)AnnotationFilter-1.28.0(bioc 3.19)

bioconductor-package

37 exports 7.17 score 18 dependencies 154 dependents 1 mentions

Last updated 2 months agofrom:ee5978e306

Exports:AnnotationFilterAnnotationFilterListCdsEndFilterCdsStartFilterconditionconvertFilterdistributeNegationEntrezFilterExonEndFilterExonIdFilterExonNameFilterExonRankFilterExonStartFilterfeaturefieldGeneBiotypeFilterGeneEndFilterGeneIdFilterGenenameFilterGeneNameFilterGeneStartFilterGRangesFilterlogicOpnotProteinIdFilterSeqNameFilterSeqStrandFiltershowsupportedFiltersSymbolFilterTxBiotypeFilterTxEndFilterTxIdFilterTxNameFilterTxStartFilterUniprotFiltervalue

Dependencies:askpassBiocGenericscurlGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesjsonlitelazyevalmimeopensslR6S4VectorssysUCSC.utilsXVectorzlibbioc

Facilities for Filtering Bioconductor Annotation Resources

Rendered fromAnnotationFilter.Rmdusingknitr::rmarkdownon Jul 01 2024.

Last update: 2018-06-12
Started: 2017-07-27

Readme and manuals

Help Manual

Help pageTopics
Filters for annotation objects.GRangesFilter AnnotationFilter AnnotationFilter-class CdsEndFilter CdsEndFilter-class CdsStartFilter CdsStartFilter-class CharacterFilter-class condition condition,AnnotationFilter-method convertFilter,AnnotationFilter,missing-method DoubleFilter-class EntrezFilter EntrezFilter-class ExonEndFilter ExonEndFilter-class ExonIdFilter ExonIdFilter-class ExonNameFilter ExonNameFilter-class ExonRankFilter ExonRankFilter-class ExonStartFilter ExonStartFilter-class feature field field,AnnotationFilter-method GeneBiotypeFilter GeneBiotypeFilter-class GeneEndFilter GeneEndFilter-class GeneIdFilter GeneIdFilter-class GeneNameFilter GeneNameFilter-class GeneStartFilter GeneStartFilter-class GRangesFilter GRangesFilter-class IntegerFilter-class not,AnnotationFilter-method ProteinIdFilter ProteinIdFilter-class SeqNameFilter SeqNameFilter-class SeqStrandFilter SeqStrandFilter-class show,AnnotationFilter-method show,CharacterFilter-method show,DoubleFilter-method show,GRangesFilter-method show,IntegerFilter-method supportedFilters supportedFilters,missing-method SymbolFilter SymbolFilter-class TxBiotypeFilter TxBiotypeFilter-class TxEndFilter TxEndFilter-class TxIdFilter TxIdFilter-class TxNameFilter TxNameFilter-class TxStartFilter TxStartFilter-class UniprotFilter UniprotFilter-class value value,AnnotationFilter-method
Combining annotation filtersAnnotationFilterList AnnotationFilterList-class convertFilter convertFilter,AnnotationFilterList,missing-method distributeNegation distributeNegation,AnnotationFilterList-method logicOp logicOp,AnnotationFilterList-method not not,AnnotationFilterList-method show,AnnotationFilterList-method value,AnnotationFilterList-method
DEPRECATED Gene name filterGenenameFilter GenenameFilter-class