{ "_id": "6acc9f65a14063b82c3a6f92", "Package": "AnnotationFilter", "Title": "Facilities for Filtering Bioconductor Annotation Resources", "Version": "1.37.0", "Authors@R": "c(\nperson(\"Martin\", \"Morgan\", email = \"martin.morgan@roswellpark.org\",\nrole = \"aut\"),\nperson(\"Johannes\", \"Rainer\", email = \"johannes.rainer@eurac.edu\",\nrole = \"aut\"),\nperson(\"Joachim\", \"Bargsten\", email = \"jw@bargsten.org\", role = \"ctb\"),\nperson(\"Daniel\", \"Van Twisk\", email = \"daniel.vantwisk@roswellpark.org\",\nrole = \"ctb\"),\nperson(\"Bioconductor Package\", \"Maintainer\",\nemail=\"maintainer@bioconductor.org\",\nrole = \"cre\"))", "URL": "https://github.com/Bioconductor/AnnotationFilter", "BugReports": "https://github.com/Bioconductor/AnnotationFilter/issues", "Description": "This package provides class and other infrastructure to\nimplement filters for manipulating Bioconductor annotation\nresources. The filters will be used by ensembldb,\nOrganism.dplyr, and other packages.", "VignetteBuilder": "knitr", "License": "Artistic-2.0", "biocViews": "Annotation, Infrastructure, Software", "Encoding": "UTF-8", "RoxygenNote": "6.0.1", "Collate": "'AllGenerics.R' 'AnnotationFilter.R' 'AnnotationFilterList.R'\n'translate-utils.R'", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:45:23 UTC", "RemoteUrl": "https://github.com/bioc/AnnotationFilter", "RemoteRef": "HEAD", "RemoteSha": "c5f7fe11171df1f73ba9233c19b857518991c0c5", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-12 08:45:10 UTC", "User": "root" }, "Author": "Martin Morgan [aut],\nJohannes Rainer [aut],\nJoachim Bargsten [ctb],\nDaniel Van Twisk [ctb],\nBioconductor Package Maintainer [cre]", "Maintainer": "Bioconductor Package Maintainer ", "_user": "bioc", "_type": "src", "_file": "AnnotationFilter_1.37.0.tar.gz", "_fileid": "https://r2.ropensci.org/16cef9664208ed4d59c9bcb9734a0c4bf79f00aeebd51a1c1d0394ea36385ec4", "_filesize": 141756, "_sha256": "16cef9664208ed4d59c9bcb9734a0c4bf79f00aeebd51a1c1d0394ea36385ec4", "_expires": "2027-01-20T08:50:43.000Z", "_created": "2026-10-12T08:45:10.000Z", "_published": "2026-10-12T08:50:44.873Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38225097863", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 1, "warning": 1, "note": 5 }, "_upstream": "https://github.com/bioc/AnnotationFilter", "_commit": { "id": "c5f7fe11171df1f73ba9233c19b857518991c0c5", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380323 }, "_maintainer": { "name": "Bioconductor Package Maintainer", "email": "maintainer@bioconductor.org", "login": "bioconductor-bot", "description": "", "uuid": 11681645 }, "_distro": "resolute", "_jobs": [ { "job": 114732032672, "time": 184, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11736876555" }, { "job": 114732033078, "time": 220, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11736721940" }, { "job": 114732032961, "time": 287, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11736692059" }, { "job": 114732032754, "time": 121, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11736621415" }, { "job": 114732032766, "time": 162, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11737011232" }, { "job": 114730655114, "time": 234, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11736541089" }, { "job": 114732032912, "time": 117, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11736451721" }, { "job": 114732033010, "time": 246, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11736302431" }, { "job": 114732032990, "time": 251, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11736946734" }, { "job": 114732033112, "time": 233, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11736517034" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.4.0", "role": "Depends" }, { "package": "utils", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "GenomicRanges", "role": "Imports" }, { "package": "lazyeval", "role": "Imports" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "RSQLite", "role": "Suggests" }, { "package": "org.Hs.eg.db", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 197, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.37.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.36.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "annotation", "infrastructure", "software", "bioconductor-package", "core-package" ], "_stars": 5, "_contributors": [ { "user": "jorainer", "count": 35, "uuid": 5506112 }, { "user": "dvantwisk", "count": 23, "uuid": 10927671 }, { "user": "mtmorgan", "count": 16, "uuid": 118552 }, { "user": "jwokaty", "count": 16, "uuid": 1744257 }, { "user": "nturaga", "count": 14, "uuid": 2746443 }, { "user": "hpages", "count": 5, "uuid": 8810451 }, { "user": "jwbargsten", "count": 2, "uuid": 919322 }, { "user": "vobencha", "count": 2, "uuid": 2466173 }, { "user": "lshep", "count": 2, "uuid": 18724380 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 21298, "source": "https://www.bioconductor.org/packages/stats/bioc/AnnotationFilter" }, "_mentions": 1, "_devurl": "https://github.com/bioconductor/annotationfilter", "_searchresults": 75, "_rbuild": "4.6.1", "_assets": [ "extra/AnnotationFilter.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/bioconductor/annotationfilter", "_realowner": "bioc", "_cranurl": false, "_exports": [ "AnnotationFilter", "AnnotationFilterList", "CdsEndFilter", "CdsStartFilter", "condition", "convertFilter", "distributeNegation", "EntrezFilter", "ExonEndFilter", "ExonIdFilter", "ExonNameFilter", "ExonRankFilter", "ExonStartFilter", "feature", "field", "GeneBiotypeFilter", "GeneEndFilter", "GeneIdFilter", "GenenameFilter", "GeneNameFilter", "GeneStartFilter", "GRangesFilter", "logicOp", "not", "ProteinIdFilter", "SeqNameFilter", "SeqStrandFilter", "show", "supportedFilters", "SymbolFilter", "TxBiotypeFilter", "TxEndFilter", "TxIdFilter", "TxNameFilter", "TxStartFilter", "UniprotFilter", "value" ], "_help": [ { "page": "AnnotationFilter", "title": "Filters for annotation objects", "topics": [ ".GRangesFilter", "AnnotationFilter", "AnnotationFilter-class", "CdsEndFilter", "CdsEndFilter-class", "CdsStartFilter", "CdsStartFilter-class", "CharacterFilter-class", "condition", "condition,AnnotationFilter-method", "convertFilter,AnnotationFilter,missing-method", "DoubleFilter-class", "EntrezFilter", "EntrezFilter-class", "ExonEndFilter", "ExonEndFilter-class", "ExonIdFilter", "ExonIdFilter-class", "ExonNameFilter", "ExonNameFilter-class", "ExonRankFilter", "ExonRankFilter-class", "ExonStartFilter", "ExonStartFilter-class", "feature", "field", "field,AnnotationFilter-method", "GeneBiotypeFilter", "GeneBiotypeFilter-class", "GeneEndFilter", "GeneEndFilter-class", "GeneIdFilter", "GeneIdFilter-class", "GeneNameFilter", "GeneNameFilter-class", "GeneStartFilter", "GeneStartFilter-class", "GRangesFilter", "GRangesFilter-class", "IntegerFilter-class", "not,AnnotationFilter-method", "ProteinIdFilter", "ProteinIdFilter-class", "SeqNameFilter", "SeqNameFilter-class", "SeqStrandFilter", "SeqStrandFilter-class", "show,AnnotationFilter-method", "show,CharacterFilter-method", "show,DoubleFilter-method", "show,GRangesFilter-method", "show,IntegerFilter-method", "supportedFilters", "supportedFilters,missing-method", "SymbolFilter", "SymbolFilter-class", "TxBiotypeFilter", "TxBiotypeFilter-class", "TxEndFilter", "TxEndFilter-class", "TxIdFilter", "TxIdFilter-class", "TxNameFilter", "TxNameFilter-class", "TxStartFilter", "TxStartFilter-class", "UniprotFilter", "UniprotFilter-class", "value", "value,AnnotationFilter-method" ] }, { "page": "AnnotationFilterList", "title": "Combining annotation filters", "topics": [ "AnnotationFilterList", "AnnotationFilterList-class", "convertFilter", "convertFilter,AnnotationFilterList,missing-method", "distributeNegation", "distributeNegation,AnnotationFilterList-method", "logicOp", "logicOp,AnnotationFilterList-method", "not", "not,AnnotationFilterList-method", "show,AnnotationFilterList-method", "value,AnnotationFilterList-method" ] }, { "page": "GenenameFilter", "title": "DEPRECATED Gene name filter", "topics": [ "GenenameFilter", "GenenameFilter-class" ] } ], "_readme": "https://github.com/bioc/AnnotationFilter/raw/HEAD/README.md", "_rundeps": [ "BiocGenerics", "generics", "GenomicRanges", "IRanges", "lazyeval", "rlang", "S4Vectors", "Seqinfo" ], "_vignettes": [ { "source": "AnnotationFilter.Rmd", "filename": "AnnotationFilter.html", "title": "Facilities for Filtering Bioconductor Annotation Resources", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Filter classes", "Usage", "Using AnnotationFilter in other packages", "Session information" ], "created": "2017-07-27 20:36:06", "modified": "2018-06-12 15:29:00", "commits": 4 } ], "_score": 10.577047558300444, "_indexed": true, "_nocasepkg": "annotationfilter", "_universes": [ "bioc", "bioconductor-bot", "bioconductor" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.37.0", "date": "2026-10-12T08:48:22.000Z", "distro": "resolute", "commit": "c5f7fe11171df1f73ba9233c19b857518991c0c5", "fileid": "https://r2.ropensci.org/fd7d7edec75ee5e40d9f66692aea989ed50d20202037447d549f9e61bc873f8f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38225097863" }, { "r": "4.6.1", "os": "linux", "version": "1.37.0", "date": "2026-10-12T08:49:46.000Z", "distro": "resolute", "commit": "c5f7fe11171df1f73ba9233c19b857518991c0c5", "fileid": "https://r2.ropensci.org/a2b00d9bea276172b2accd96eb54ec98bdb0187226f8ecbfb543c1959f977794", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38225097863" }, { "r": "4.5.3", "os": "mac", "version": "1.37.0", "date": "2026-10-12T08:47:05.000Z", "commit": "c5f7fe11171df1f73ba9233c19b857518991c0c5", "fileid": "https://r2.ropensci.org/1be36e0d7286704bc7b3b80af3e05a225de47071cc72b544d4f6b9860ad74ff6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38225097863" }, { "r": "4.6.1", "os": "mac", "version": "1.37.0", "date": "2026-10-12T08:47:40.000Z", "commit": "c5f7fe11171df1f73ba9233c19b857518991c0c5", "fileid": "https://r2.ropensci.org/a28617b8a73499320e1c1eec7524da632fb91771bbad3962dced2d232573e147", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38225097863" }, { "r": "4.6.0", "os": "wasm", "version": "1.37.0", "date": "2026-10-12T08:47:27.000Z", "commit": "c5f7fe11171df1f73ba9233c19b857518991c0c5", "fileid": "https://r2.ropensci.org/9fcf5c4cd377cf56a6fe990b02e3f78a1abdc7a0bf8cdc10f327231057e35f77", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38225097863" }, { "r": "4.7.0", "os": "win", "version": "1.37.0", "date": "2026-10-12T08:48:43.000Z", "commit": "c5f7fe11171df1f73ba9233c19b857518991c0c5", "fileid": "https://r2.ropensci.org/3bb59a753fc009af7d87e5fcd192ccdb860128b4c736bc1c82826ec10261f4a2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38225097863" }, { "r": "4.5.3", "os": "win", "version": "1.37.0", "date": "2026-10-12T08:48:52.000Z", "commit": "c5f7fe11171df1f73ba9233c19b857518991c0c5", "fileid": "https://r2.ropensci.org/c53e703f6efad01e0669948cf9fed4009066478059666ff94b7338e7c03213ae", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38225097863" }, { "r": "4.6.1", "os": "win", "version": "1.37.0", "date": "2026-10-12T08:48:34.000Z", "commit": "c5f7fe11171df1f73ba9233c19b857518991c0c5", "fileid": "https://r2.ropensci.org/f8c370275b33c33a7877d49e2ebf0c159a5dbecd9341cfe8cde37bf95720baeb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38225097863" } ] }