Package: ASSIGN 1.49.0

Introduction | How to use the ASSIGN package | Example Data | Run r BiocStyle::Biocpkg("ASSIGN") all-in-one using assign.wrapper | Example 1: Training data is available, but a gene list of pathway signature genes is not available: | Example 2: Training data is available, and a gene list of pathway signature genes is available: | Example 3: Training data is not available, but a gene list of pathway signature genes is available: | Run r BiocStyle::Biocpkg("ASSIGN") step-by-step | assign.preprocess | assign.mcmc | assign.convergence | assign.summary | assign.cv.output | assign.output | Additional Features | Anchor Gene Lists and Exclude Gene Lists | Fraction of Upregulated Genes | GFRN Optimization Procedure | Example Optimization Procedure | Citing r BiocStyle::Biocpkg("ASSIGN") | Conclusion | Session info