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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "ASSIGN" in publications use:'
type: software
license: MIT
title: 'ASSIGN: Adaptive Signature Selection and InteGratioN (ASSIGN)'
version: 1.41.0
abstract: ASSIGN is a computational tool to evaluate the pathway deregulation/activation
  status in individual patient samples. ASSIGN employs a flexible Bayesian factor
  analysis approach that adapts predetermined pathway signatures derived either from
  knowledge-based literature or from perturbation experiments to the cell-/tissue-specific
  pathway signatures. The deregulation/activation level of each context-specific pathway
  is quantified to a score, which represents the extent to which a patient sample
  encompasses the pathway deregulation/activation signature.
authors:
- family-names: Shen
  given-names: Ying
  email: yshen3@bu.edu
- family-names: Bild
  given-names: Andrea H.
  email: abild@coh.org
- family-names: Johnson
  given-names: W. Evan
  email: wej@bu.edu
  orcid: https://orcid.org/0000-0002-6247-6595
- family-names: Rahman
  given-names: Mumtehena
  email: moom.rahman@utah.edu
- family-names: Jenkins
  given-names: David
  email: dfj@bu.edu
  orcid: https://orcid.org/0000-0002-7451-4288
repository: https://bioc.r-universe.dev
repository-code: https://github.com/compbiomed/ASSIGN
url: https://compbiomed.github.io/ASSIGN/
date-released: '2014-10-30'
contact:
- family-names: Jenkins
  given-names: David
  email: dfj@bu.edu
  orcid: https://orcid.org/0000-0002-7451-4288