Package: AMOUNTAIN 1.31.0

Dong Li

AMOUNTAIN: Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach

A pure data-driven gene network, weighted gene co-expression network (WGCN) could be constructed only from expression profile. Different layers in such networks may represent different time points, multiple conditions or various species. AMOUNTAIN aims to search active modules in multi-layer WGCN using a continuous optimization approach.

Authors:Dong Li, Shan He, Zhisong Pan and Guyu Hu

AMOUNTAIN_1.31.0.tar.gz
AMOUNTAIN_1.31.0.zip(r-4.5)AMOUNTAIN_1.31.0.zip(r-4.4)AMOUNTAIN_1.31.0.zip(r-4.3)
AMOUNTAIN_1.31.0.tgz(r-4.4-arm64)AMOUNTAIN_1.31.0.tgz(r-4.4-x86_64)AMOUNTAIN_1.31.0.tgz(r-4.3-arm64)AMOUNTAIN_1.31.0.tgz(r-4.3-x86_64)
AMOUNTAIN_1.31.0.tar.gz(r-4.5-noble)AMOUNTAIN_1.31.0.tar.gz(r-4.4-noble)
AMOUNTAIN_1.31.0.tgz(r-4.4-emscripten)AMOUNTAIN_1.31.0.tgz(r-4.3-emscripten)
AMOUNTAIN.pdf |AMOUNTAIN.html✨
AMOUNTAIN/json (API)
NEWS

# Install 'AMOUNTAIN' in R:
install.packages('AMOUNTAIN', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • gsl– GNU Scientific Library (GSL)

On BioConductor:AMOUNTAIN-1.31.0(bioc 3.20)AMOUNTAIN-1.30.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

10 exports 0.91 score 0 dependencies 1 dependents

Last updated 2 months agofrom:19739fb6ee

Exports:CGPFixSSCGPFixSSMultiLayerCGPFixSSTwolayerEuclideanProjectionENNORMmoduleIdentificationGPFixSSmoduleIdentificationGPFixSSMultilayermoduleIdentificationGPFixSSTwolayermultilayernetworkSimulationnetworkSimulationtwolayernetworkSimulation

Dependencies:

Usage of AMOUNTAIN

Dong Li [email protected]

Rendered fromAMOUNTAIN.Rmdusingknitr::rmarkdownon Jun 30 2024.

Last update: 2016-11-16
Started: 2016-11-16