Package: AMOUNTAIN 1.39.0

Dong Li

AMOUNTAIN: Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach

A pure data-driven gene network, weighted gene co-expression network (WGCN) could be constructed only from expression profile. Different layers in such networks may represent different time points, multiple conditions or various species. AMOUNTAIN aims to search active modules in multi-layer WGCN using a continuous optimization approach.

Authors:Dong Li, Shan He, Zhisong Pan and Guyu Hu

AMOUNTAIN_1.39.0.tar.gz
AMOUNTAIN_1.39.0.zip(r-4.7)AMOUNTAIN_1.39.0.zip(r-4.6)AMOUNTAIN_1.39.0.zip(r-4.5)
AMOUNTAIN_1.39.0.tgz(r-4.6-x86_64)AMOUNTAIN_1.39.0.tgz(r-4.6-arm64)AMOUNTAIN_1.39.0.tgz(r-4.5-x86_64)AMOUNTAIN_1.39.0.tgz(r-4.5-arm64)
AMOUNTAIN_1.39.0.tar.gz(r-4.7-arm64)AMOUNTAIN_1.39.0.tar.gz(r-4.7-x86_64)AMOUNTAIN_1.39.0.tar.gz(r-4.6-arm64)AMOUNTAIN_1.39.0.tar.gz(r-4.6-x86_64)
AMOUNTAIN_1.39.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
AMOUNTAIN/json (API)
NEWS

# Install 'AMOUNTAIN' in R:

install.packages('AMOUNTAIN', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

gsl– GNU Scientific Library (GSL)

On BioConductor:AMOUNTAIN-1.39.0(bioc 3.24)AMOUNTAIN-1.38.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneexpression microarray differentialexpression network gsl

3.78 score 1 packages 6 scripts 530 downloads 10 exports 0 dependencies

Last updated from:790c7cc689. Checks:1 ERROR, 12 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	160
linux-devel-x86_64	OK	174
source / vignettes	OK	207
linux-release-arm64	OK	128
linux-release-x86_64	OK	142
macos-release-arm64	OK	124
macos-release-x86_64	OK	219
macos-oldrel-arm64	OK	95
macos-oldrel-x86_64	OK	204
windows-devel	OK	89
windows-release	OK	107
windows-oldrel	OK	82
wasm-release	OK	110

Exports:CGPFixSS CGPFixSSMultiLayer CGPFixSSTwolayer EuclideanProjectionENNORM moduleIdentificationGPFixSS moduleIdentificationGPFixSSMultilayer moduleIdentificationGPFixSSTwolayer multilayernetworkSimulation networkSimulation twolayernetworkSimulation

Dependencies:

Usage of AMOUNTAIN

Dong Li [email protected]

Rendered fromAMOUNTAIN.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2016-11-16
Started: 2016-11-16

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Module Identification	CGPFixSS
Module Identification for multi-layer network	CGPFixSSMultiLayer
Module Identification for two-layer network	CGPFixSSTwolayer
Euclidean projection on elastic net	EuclideanProjectionENNORM
Module Identification	moduleIdentificationGPFixSS
Module Identification for multi-layer network	moduleIdentificationGPFixSSMultilayer
Module Identification for two-layer network	moduleIdentificationGPFixSSTwolayer
Illustration of multi-layer weighted network simulation	multilayernetworkSimulation
Illustration of weighted network simulation	networkSimulation
Illustration of two-layer weighted network simulation	twolayernetworkSimulation