Motivation | Network simulation | Module identification for single layer network | Module identification for two-layer network | Module identification for multi-layer network | Module identification for real-world data | High-performance considerations | Biological explanation | Developer page | Session Information | References
Package: AMOUNTAIN 1.39.0
Dong Li
AMOUNTAIN: Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach
A pure data-driven gene network, weighted gene co-expression network (WGCN) could be constructed only from expression profile. Different layers in such networks may represent different time points, multiple conditions or various species. AMOUNTAIN aims to search active modules in multi-layer WGCN using a continuous optimization approach.
Authors:
AMOUNTAIN_1.39.0.tar.gz
AMOUNTAIN_1.39.0.zip(r-4.7)AMOUNTAIN_1.39.0.zip(r-4.6)AMOUNTAIN_1.39.0.zip(r-4.5)
AMOUNTAIN_1.39.0.tgz(r-4.6-x86_64)AMOUNTAIN_1.39.0.tgz(r-4.6-arm64)AMOUNTAIN_1.39.0.tgz(r-4.5-x86_64)AMOUNTAIN_1.39.0.tgz(r-4.5-arm64)
AMOUNTAIN_1.39.0.tar.gz(r-4.7-arm64)AMOUNTAIN_1.39.0.tar.gz(r-4.7-x86_64)AMOUNTAIN_1.39.0.tar.gz(r-4.6-arm64)AMOUNTAIN_1.39.0.tar.gz(r-4.6-x86_64)
AMOUNTAIN_1.39.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
AMOUNTAIN/json (API)
| # Install 'AMOUNTAIN' in R: |
| install.packages('AMOUNTAIN', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:AMOUNTAIN-1.39.0(bioc 3.24)AMOUNTAIN-1.38.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
geneexpressionmicroarraydifferentialexpressionnetworkgsl
Last updated from:790c7cc689. Checks:1 ERROR, 13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 155 | ||
| linux-devel-arm64 | OK | 146 | ||
| linux-devel-x86_64 | OK | 200 | ||
| source / vignettes | OK | 195 | ||
| linux-release-arm64 | OK | 152 | ||
| linux-release-x86_64 | OK | 148 | ||
| macos-release-arm64 | OK | 96 | ||
| macos-release-x86_64 | OK | 155 | ||
| macos-oldrel-arm64 | OK | 93 | ||
| macos-oldrel-x86_64 | OK | 150 | ||
| windows-devel | OK | 84 | ||
| windows-release | OK | 79 | ||
| windows-oldrel | OK | 106 | ||
| wasm-release | OK | 154 |
Exports:CGPFixSSCGPFixSSMultiLayerCGPFixSSTwolayerEuclideanProjectionENNORMmoduleIdentificationGPFixSSmoduleIdentificationGPFixSSMultilayermoduleIdentificationGPFixSSTwolayermultilayernetworkSimulationnetworkSimulationtwolayernetworkSimulation
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Module Identification | CGPFixSS |
| Module Identification for multi-layer network | CGPFixSSMultiLayer |
| Module Identification for two-layer network | CGPFixSSTwolayer |
| Euclidean projection on elastic net | EuclideanProjectionENNORM |
| Module Identification | moduleIdentificationGPFixSS |
| Module Identification for multi-layer network | moduleIdentificationGPFixSSMultilayer |
| Module Identification for two-layer network | moduleIdentificationGPFixSSTwolayer |
| Illustration of multi-layer weighted network simulation | multilayernetworkSimulation |
| Illustration of weighted network simulation | networkSimulation |
| Illustration of two-layer weighted network simulation | twolayernetworkSimulation |