Exploring the data in xcoredata
Package: xcoredata 1.17.0
Maciej Migdał
xcoredata: data package for xcore
Provides data to use with xcore package.
Authors:
xcoredata_1.17.0.tar.gz
xcoredata_1.17.0.tar.gz(r-4.7-any)xcoredata_1.17.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
xcoredata/json (API)
| # Install 'xcoredata' in R: |
| install.packages('xcoredata', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:xcoredata-1.17.0(data/experiment 3.24)xcoredata-1.16.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimenthubexperimentdatahomo_sapiens_datadatapkg
Last updated from:e4375ad6dc. Checks:1 WARNING, 3 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 161 | ||
| linux-devel | OK | 357 | ||
| source / vignettes | OK | 347 | ||
| linux-release | OK | 355 |
Exports:chip_atlas_metachip_atlas_promoters_f5entrez2fantompromoters_f5promoters_f5_coreremap_metaremap_promoters_f5symbol2fantom
Dependencies:AnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrExperimentHubfastmapfilelockgenericsgluehttrhttr2IRangesjsonliteKEGGRESTlifecyclemagrittrmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrlangRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| ChIP-Atlas metadata | chip_atlas_meta |
| ChIP-Atlas FANTOM5 promoters intersection matrix | chip_atlas_promoters_f5 |
| ENTREZ IDs to FANTOM5 core promoters names mappings | entrez2fantom |
| Promoters GenomicRanges object | promoters_f5 |
| Core promoters GenomicRanges object | promoters_f5_core |
| ReMap2020 metadata | remap_meta |
| ReMap2020 and FANTOM5 promoters intersection matrix | remap_promoters_f5 |
| Gene symbols to FANTOM5 core promoters names mappings | symbol2fantom |