Package: vtpnet 0.47.0

VJ Carey

vtpnet: variant-transcription factor-phenotype networks

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Authors:VJ Carey <[email protected]>

vtpnet_0.47.0.tar.gz
vtpnet_0.47.0.zip(r-4.5)vtpnet_0.47.0.zip(r-4.4)vtpnet_0.47.0.zip(r-4.3)
vtpnet_0.47.0.tgz(r-4.4-any)vtpnet_0.47.0.tgz(r-4.3-any)
vtpnet_0.47.0.tar.gz(r-4.5-noble)vtpnet_0.47.0.tar.gz(r-4.4-noble)
vtpnet_0.47.0.tgz(r-4.4-emscripten)vtpnet_0.47.0.tgz(r-4.3-emscripten)
vtpnet.pdf |vtpnet.html✨
vtpnet/json (API)

# Install 'vtpnet' in R:
install.packages('vtpnet', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • cancerMap - Variant-transcription factor-phenotype networks
  • maurGWAS - Variant-transcription factor-phenotype networks
  • pax4 - Variant-transcription factor-phenotype networks
  • pax4_75 - Variant-transcription factor-phenotype networks
  • pax4_85 - Variant-transcription factor-phenotype networks

On BioConductor:vtpnet-0.47.0(bioc 3.21)vtpnet-0.46.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

network

3.30 score 1 scripts 240 downloads 9 exports 104 dependencies

Last updated 22 days agofrom:822bd57a20. Checks:OK: 1 NOTE: 3 WARNING: 3. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winWARNINGOct 31 2024
R-4.5-linuxNOTEOct 31 2024
R-4.4-winWARNINGOct 31 2024
R-4.4-macNOTEOct 31 2024
R-4.3-winWARNINGOct 31 2024
R-4.3-macNOTEOct 31 2024

Exports:filterGWASbyMapgetMtagsgetOneHitsgwMatchPWMmatrcMdbSearchToDiskrng2facHitsrunfimosetupGWPM

Dependencies:abindAnnotationDbiAnnotationHubaskpassBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionBiostringsbitbit64bitopsblobBSgenomecachemclicliprcodetoolscpp11crayoncurlDBIdbplyrDelayedArraydoParalleldplyrfansifastmapfilelockforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluegraphgwascathmshttrIRangesiteratorsjsonliteKEGGRESTlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigplogrpngprettyunitsprogresspurrrR6rappdirsRCurlreadrrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowsnpStatsSparseArraystringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbUCSC.utilsutf8VariantAnnotationvctrsvroomwithrXMLXVectoryamlzlibbioc

vtpnet: variant-transcription factor-network tools

Rendered fromvtpnet.Rnwusingutils::Sweaveon Oct 31 2024.

Last update: 2020-10-21
Started: 2013-05-30

Readme and manuals

Help Manual

Help pageTopics
variant-transcription factor-phenotype networksvtpnet-package cancerMap filterGWASbyMap getMtags getOneHits gwMatchPWM matrc maurGWAS MdbSearchToDisk pax4 pax4_75 pax4_85 rng2facHits runfimo setupGWPM vtpnet