Package: vtpnet 0.45.0

VJ Carey

vtpnet: variant-transcription factor-phenotype networks

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Authors:VJ Carey <[email protected]>

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vtpnet.pdf |vtpnet.html✨
vtpnet/json (API)

# Install 'vtpnet' in R:
install.packages('vtpnet', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • cancerMap - Variant-transcription factor-phenotype networks
  • maurGWAS - Variant-transcription factor-phenotype networks
  • pax4 - Variant-transcription factor-phenotype networks
  • pax4_75 - Variant-transcription factor-phenotype networks
  • pax4_85 - Variant-transcription factor-phenotype networks

On BioConductor:vtpnet-0.45.0(bioc 3.20)vtpnet-0.44.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

9 exports 0.91 score 104 dependencies

Last updated 2 months agofrom:55ee11c3bf

Exports:filterGWASbyMapgetMtagsgetOneHitsgwMatchPWMmatrcMdbSearchToDiskrng2facHitsrunfimosetupGWPM

Dependencies:abindAnnotationDbiAnnotationHubaskpassBHBiobaseBiocFileCacheBiocGenericsBiocIOBiocManagerBiocParallelBiocVersionBiostringsbitbit64bitopsblobBSgenomecachemclicliprcodetoolscpp11crayoncurlDBIdbplyrDelayedArraydoParalleldplyrfansifastmapfilelockforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluegraphgwascathmshttrIRangesiteratorsjsonliteKEGGRESTlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigplogrpngprettyunitsprogresspurrrR6rappdirsRCurlreadrrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowsnpStatsSparseArraystringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbUCSC.utilsutf8VariantAnnotationvctrsvroomwithrXMLXVectoryamlzlibbioc

vtpnet: variant-transcription factor-network tools

Rendered fromvtpnet.Rnwusingutils::Sweaveon Jul 03 2024.

Last update: 2020-10-21
Started: 2013-05-30

Readme and manuals

Help Manual

Help pageTopics
variant-transcription factor-phenotype networksvtpnet-package cancerMap filterGWASbyMap getMtags getOneHits gwMatchPWM matrc maurGWAS MdbSearchToDisk pax4 pax4_75 pax4_85 rng2facHits runfimo setupGWPM vtpnet