Package: tripr 1.19.0

Nikolaos Pechlivanis

tripr: T-cell Receptor/Immunoglobulin Profiler (TRIP)

TRIP is a software framework that provides analytics services on antigen receptor (B cell receptor immunoglobulin, BcR IG | T cell receptor, TR) gene sequence data. It is a web application written in R Shiny. It takes as input the output files of the IMGT/HighV-Quest tool. Users can select to analyze the data from each of the input samples separately, or the combined data files from all samples and visualize the results accordingly.

Authors:Maria Th. Kotouza [aut], Katerina Gemenetzi [aut], Chrysi Galigalidou [aut], Elisavet Vlachonikola [aut], Nikolaos Pechlivanis [cre], Andreas Agathangelidis [aut], Raphael Sandaltzopoulos [aut], Pericles A. Mitkas [aut], Kostas Stamatopoulos [aut], Anastasia Chatzidimitriou [aut], Fotis E. Psomopoulos [aut], Iason Ofeidis [aut], Aspasia Orfanou [aut]

tripr_1.19.0.tar.gz
tripr_1.19.0.zip(r-4.7)tripr_1.19.0.zip(r-4.6)tripr_1.19.0.zip(r-4.5)
tripr_1.19.0.tgz(r-4.6-any)tripr_1.19.0.tgz(r-4.5-any)
tripr_1.19.0.tar.gz(r-4.7-any)tripr_1.19.0.tar.gz(r-4.6-any)
tripr_1.19.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
tripr/json (API)
NEWS

# Install 'tripr' in R:
install.packages('tripr', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/biodataanalysisgroup/tripr/issues

On BioConductor:tripr-1.19.0(bioc 3.24)tripr-1.18.0(bioc 3.23)

batcheffectmultiplecomparisongeneexpressionimmunooncologytargetedresequencingbioconductorclonotype

5.56 score 3 stars 10 scripts 362 downloads 2 exports 91 dependencies

Last updated from:1f6f082d7a. Checks:8 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING247
linux-devel-x86_64WARNING422
source / vignettesOK327
linux-release-x86_64WARNING381
macos-release-arm64WARNING244
macos-oldrel-arm64WARNING172
windows-develWARNING243
windows-releaseWARNING220
windows-oldrelWARNING213
wasm-releaseOK208

Exports:run_apprun_TRIP

Dependencies:askpassattemptbase64encbslibcachemcliclustercommonmarkconfigcpp11crosstalkcurldata.tabledigestdplyrDTevaluatefarverfastmapfontawesomefsgenericsggplot2gluegolemgridExtragtableherehighrhtmltoolshtmlwidgetshttpuvhttrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemisc3dnlmeopensslotelpermutepillarpkgconfigplot3DplotlyplyrpromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownrprojrootS7sassscalesshinyshinyBSshinyFilesshinyjssourcetoolsstringdiststringistringrsystibbletidyrtidyselecttinytexutf8vctrsveganviridisLitewithrxfunxtableyaml

tripr User Guide

Maria Th. Kotouza, Katerina Gemenetzi, Chrysi Galigalidou, Elisavet Vlachonikola, Nikolaos Pechlivanis, Andreas Agathangelidis, Raphael Sandaltzopoulos, Pericles A. Mitkas, Kostas Stamatopoulos, Anastasia Chatzidimitriou, Fotis E. Psomopoulos

Rendered fromtripr_guide.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2026-03-16
Started: 2021-08-23