Package: tidysbml 0.99.11

Veronica Paparozzi

tidysbml: Extract SBML's data into dataframes

Starting from one SBML file, it extracts information from each listOfCompartments, listOfSpecies and listOfReactions element by saving them into data frames. Each table provides one row for each entity (i.e. either compartment, species, reaction or speciesReference) and one set of columns for the attributes, one column for the content of the 'notes' subelement and one set of columns for the content of the 'annotation' subelement.

Authors:Veronica Paparozzi [aut, cre], Christine Nardini [aut]

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tidysbml.pdf |tidysbml.html✨
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NEWS

# Install 'tidysbml' in R:
install.packages('tidysbml', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/veronicapaparozzi/tidysbml/issues

On BioConductor:tidysbml-0.99.10(bioc 3.20)

graphandnetworknetworkpathwayssoftware

4.65 score 2 scripts 4 exports 3 dependencies

Last updated 4 days agofrom:0104efdb92. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 20 2024
R-4.5-winNOTEOct 20 2024
R-4.5-linuxNOTEOct 20 2024
R-4.4-winNOTEOct 20 2024
R-4.4-macNOTEOct 20 2024
R-4.3-winNOTESep 26 2024
R-4.3-macNOTESep 26 2024

Exports:as_dfas_dfssbml_as_listsbml_validate

Dependencies:clirlangxml2

Introduction to the tidysbml package

Veronica Paparozzi

Rendered fromtidysbml-introduction.Rmdusingknitr::rmarkdownon Oct 20 2024.

Last update: 2024-09-05
Started: 2024-03-27