Package: tidysbml 1.1.0
Veronica Paparozzi
tidysbml: Extract SBML's data into dataframes
Starting from one SBML file, it extracts information from each listOfCompartments, listOfSpecies and listOfReactions element by saving them into data frames. Each table provides one row for each entity (i.e. either compartment, species, reaction or speciesReference) and one set of columns for the attributes, one column for the content of the 'notes' subelement and one set of columns for the content of the 'annotation' subelement.
Authors:
tidysbml_1.1.0.tar.gz
tidysbml_1.1.0.zip(r-4.5)tidysbml_1.1.0.zip(r-4.4)tidysbml_0.99.10.zip(r-4.3)
tidysbml_1.1.0.tgz(r-4.4-any)tidysbml_0.99.10.tgz(r-4.3-any)
tidysbml_1.1.0.tar.gz(r-4.5-noble)tidysbml_1.1.0.tar.gz(r-4.4-noble)
tidysbml_1.1.0.tgz(r-4.4-emscripten)tidysbml_0.99.10.tgz(r-4.3-emscripten)
tidysbml.pdf |tidysbml.html✨
tidysbml/json (API)
NEWS
| # Install 'tidysbml' in R: |
| install.packages('tidysbml', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/veronicapaparozzi/tidysbml/issues
On BioConductor:tidysbml-1.1.0(bioc 3.21)tidysbml-1.0.0(bioc 3.20)
graphandnetworknetworkpathwayssoftware
Last updated 23 days agofrom:1c63b02663. Checks:OK: 1 ERROR: 1 NOTE: 5. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-win | NOTE | Oct 31 2024 |
| R-4.5-linux | ERROR | Oct 31 2024 |
| R-4.4-win | NOTE | Oct 31 2024 |
| R-4.4-mac | NOTE | Oct 31 2024 |
| R-4.3-win | NOTE | Sep 26 2024 |
| R-4.3-mac | NOTE | Sep 26 2024 |
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Create a dataframe for the type of entity selected | as_df |
| Create a list of dataframes (full extraction) | as_dfs |
| Create R list from sbml file | sbml_as_list |
| Validate SBML schema | sbml_validate |
