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  "Title": "Extract SBML's data into dataframes",
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  "Authors@R": "c( \nperson(\"Veronica\", \"Paparozzi\", role = c(\"aut\", \"cre\"), email = \"veronicapaparozzi1@gmail.com\", comment = c(ORCID = \"0009-0000-2961-1559\")),\nperson(\"Christine\", \"Nardini\", role = c(\"aut\"), email = \"christine.nardini@cnr.it\", comment = c(ORCID = \"0000-0001-7601-321X\")) )",
  "Description": "Starting from one SBML file, it extracts information from\neach listOfCompartments, listOfSpecies and listOfReactions\nelement by saving them into data frames. Each table provides\none row for each entity (i.e. either compartment, species,\nreaction or speciesReference) and one set of columns for the\nattributes, one column for the content of the 'notes'\nsubelement and one set of columns for the content of the\n'annotation' subelement.",
  "License": "CC BY 4.0",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.1",
  "biocViews": "GraphAndNetwork, Network, Pathways, Software",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/veronicapaparozzi/tidysbml",
  "BugReports": "https://github.com/veronicapaparozzi/tidysbml/issues",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libxml2-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 13:03:37 UTC",
  "RemoteUrl": "https://github.com/bioc/tidysbml",
  "RemoteRef": "HEAD",
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  "NeedsCompilation": "no",
  "Packaged": {
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    "User": "root"
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  "Author": "Veronica Paparozzi [aut, cre] (ORCID:\n<https://orcid.org/0009-0000-2961-1559>),\nChristine Nardini [aut] (ORCID:\n<https://orcid.org/0000-0001-7601-321X>)",
  "Maintainer": "Veronica Paparozzi <veronicapaparozzi1@gmail.com>",
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  "_created": "2026-07-04T01:16:46.000Z",
  "_published": "2026-07-04T17:04:36.598Z",
  "_bioccheck": {
    "error": 0,
    "warning": 1,
    "note": 4
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28690389331",
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  "_upstream": "https://github.com/bioc/tidysbml",
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    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777381417
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  "_maintainer": {
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    "email": "veronicapaparozzi1@gmail.com",
    "login": "veronicapaparozzi",
    "description": "",
    "uuid": 161085421
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  "_selfowned": true,
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  "_updates": [
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    "pathways",
    "software"
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  "_cranurl": false,
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    "as_dfs",
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      "title": "Create a dataframe for the type of entity selected",
      "topics": [
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      ]
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      ]
    },
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      "title": "Create R list from sbml file",
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      ]
    },
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  "_nocasepkg": "tidysbml",
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