{
  "_id": "6a1aee8a1d7bb097a09f5a45",
  "Package": "tidysbml",
  "Type": "Package",
  "Title": "Extract SBML's data into dataframes",
  "Version": "1.7.0",
  "Authors@R": "c( \nperson(\"Veronica\", \"Paparozzi\", role = c(\"aut\", \"cre\"), email = \"veronicapaparozzi1@gmail.com\", comment = c(ORCID = \"0009-0000-2961-1559\")),\nperson(\"Christine\", \"Nardini\", role = c(\"aut\"), email = \"christine.nardini@cnr.it\", comment = c(ORCID = \"0000-0001-7601-321X\")) )",
  "Description": "Starting from one SBML file, it extracts information from\neach listOfCompartments, listOfSpecies and listOfReactions\nelement by saving them into data frames. Each table provides\none row for each entity (i.e. either compartment, species,\nreaction or speciesReference) and one set of columns for the\nattributes, one column for the content of the 'notes'\nsubelement and one set of columns for the content of the\n'annotation' subelement.",
  "License": "CC BY 4.0",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.1",
  "biocViews": "GraphAndNetwork, Network, Pathways, Software",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/veronicapaparozzi/tidysbml",
  "BugReports": "https://github.com/veronicapaparozzi/tidysbml/issues",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libxml2-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 13:03:37 UTC",
  "RemoteUrl": "https://github.com/bioc/tidysbml",
  "RemoteRef": "HEAD",
  "RemoteSha": "e4b622c1446b5594e09a385162ba52efb1762044",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-30 09:42:05 UTC",
    "User": "root"
  },
  "Author": "Veronica Paparozzi [aut, cre] (ORCID:\n<https://orcid.org/0009-0000-2961-1559>),\nChristine Nardini [aut] (ORCID:\n<https://orcid.org/0000-0001-7601-321X>)",
  "Maintainer": "Veronica Paparozzi <veronicapaparozzi1@gmail.com>",
  "MD5sum": "b1bc27fa40c51c89891f4f36263efa1e",
  "_user": "bioc",
  "_type": "src",
  "_file": "tidysbml_1.7.0.tar.gz",
  "_fileid": "3434d156d427a3d4992525de9caee3e1cdbf51092614ce086129b12c18c8c3ae",
  "_filesize": 166790,
  "_sha256": "3434d156d427a3d4992525de9caee3e1cdbf51092614ce086129b12c18c8c3ae",
  "_created": "2026-05-30T09:42:05.000Z",
  "_published": "2026-05-30T14:04:58.554Z",
  "_jobs": [
    {
      "job": 78640358710,
      "time": 150,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7307398747"
    },
    {
      "job": 78640358719,
      "time": 168,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7307400267"
    },
    {
      "job": 78640358735,
      "time": 155,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7307399310"
    },
    {
      "job": 78640358729,
      "time": 84,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7308726301"
    },
    {
      "job": 78640358739,
      "time": 99,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7308727236"
    },
    {
      "job": 78639717121,
      "time": 217,
      "config": "source",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7307258436"
    },
    {
      "job": 78640358709,
      "time": 119,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7307396011"
    },
    {
      "job": 78640358726,
      "time": 94,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7307394384"
    },
    {
      "job": 78640358757,
      "time": 74,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7307393323"
    },
    {
      "job": 78640358716,
      "time": 78,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7307393055"
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 1,
    "note": 5
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26676555094",
  "_status": "failure",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/tidysbml",
  "_commit": {
    "id": "e4b622c1446b5594e09a385162ba52efb1762044",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777381417
  },
  "_maintainer": {
    "name": "Veronica Paparozzi",
    "email": "veronicapaparozzi1@gmail.com",
    "login": "veronicapaparozzi",
    "description": "",
    "uuid": 161085421
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.4.0",
      "role": "Depends"
    },
    {
      "package": "xml2",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "biomaRt",
      "role": "Suggests"
    },
    {
      "package": "RCy3",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.7.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.6.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "graphandnetwork",
    "network",
    "pathways",
    "software"
  ],
  "_stars": 2,
  "_contributors": [
    {
      "user": "veronicapaparozzi",
      "count": 21,
      "uuid": 161085421
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 249,
    "source": "https://www.bioconductor.org/packages/stats/bioc/tidysbml"
  },
  "_devurl": "https://github.com/veronicapaparozzi/tidysbml",
  "_searchresults": 8,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/tidysbml.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/veronicapaparozzi/tidysbml",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "as_df",
    "as_dfs",
    "sbml_as_list",
    "sbml_validate"
  ],
  "_help": [
    {
      "page": "as_df",
      "title": "Create a dataframe for the type of entity selected",
      "topics": [
        "as_df"
      ]
    },
    {
      "page": "as_dfs",
      "title": "Create a list of dataframes (full extraction)",
      "topics": [
        "as_dfs"
      ]
    },
    {
      "page": "sbml_as_list",
      "title": "Create R list from sbml file",
      "topics": [
        "sbml_as_list"
      ]
    },
    {
      "page": "sbml_validate",
      "title": "Validate SBML schema",
      "topics": [
        "sbml_validate"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/tidysbml/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "rlang",
    "xml2"
  ],
  "_score": 3.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "tidysbml",
  "_universes": [
    "bioc",
    "veronicapaparozzi"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.7.0",
      "date": "2026-05-30T10:06:34.000Z",
      "distro": "noble",
      "commit": "e4b622c1446b5594e09a385162ba52efb1762044",
      "fileid": "dd45012b9223b53e92da2073ac013a1886a1437f7111632e641be08fc324ee49",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676555094"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.7.0",
      "date": "2026-05-30T10:06:26.000Z",
      "distro": "noble",
      "commit": "e4b622c1446b5594e09a385162ba52efb1762044",
      "fileid": "c4a6ba4d7239871d95ea58d7a539b4e54987519b6ed0802536383c36063fb6e0",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676555094"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.7.0",
      "date": "2026-05-30T14:04:19.000Z",
      "commit": "e4b622c1446b5594e09a385162ba52efb1762044",
      "fileid": "fa1a0394baec62831ce8ccb1264b3c6811a88c37f597f12ecad288712cdded57",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676555094"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.7.0",
      "date": "2026-05-30T14:04:25.000Z",
      "commit": "e4b622c1446b5594e09a385162ba52efb1762044",
      "fileid": "67c1c741d25626591bbf50a7d5f9800a67958fb100108187b421683a506f6d69",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676555094"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.7.0",
      "date": "2026-05-30T10:06:04.000Z",
      "commit": "e4b622c1446b5594e09a385162ba52efb1762044",
      "fileid": "8046d6e59b4bdd0f5c7d8c9332ecc44802d7b54f629089f696955da63afa5fd0",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676555094"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.7.0",
      "date": "2026-05-30T10:05:28.000Z",
      "commit": "e4b622c1446b5594e09a385162ba52efb1762044",
      "fileid": "63ab31fcf05e81a0f302b4b574f1ed38859072fd9b0146a555650cfc55d7cd73",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676555094"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.7.0",
      "date": "2026-05-30T10:05:17.000Z",
      "commit": "e4b622c1446b5594e09a385162ba52efb1762044",
      "fileid": "4c53f7d509d57b926f1a85c75104cdda0e06fcbd297927ad5cf13153ffc6e9b5",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676555094"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.7.0",
      "date": "2026-05-30T10:05:12.000Z",
      "commit": "e4b622c1446b5594e09a385162ba52efb1762044",
      "fileid": "50609d2776c67c7c1218257b0f8552c770236e81dd149172451a056facfb042e",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676555094"
    }
  ]
}