Introduction | Package Overview | Installation | Demo | Load Required Packages | SummarizedExperiment | Opting In and Out of Tidy Print | Opt In to Tidy Print | Opt Out of Tidy Print | Messaging function | Session info
Package: tidyprint 1.1.1
Stefano Mangiola
tidyprint: Custom Print Methods for SummarizedExperiment
Provides customised print methods for 'SummarizedExperiment' objects to enhance readability and usability within a tidy workflow. It offers consistent, tidyverse-aligned console displays, including alternative tibble abstractions for large genomic data to improve discoverability and interpretation. The package also includes unified, contextual messaging utilities intended for the 'tidyomics' ecosystem.
Authors:
tidyprint_1.1.1.tar.gz
tidyprint_1.1.1.zip(r-4.7-any)tidyprint_1.1.1.zip(r-4.6-any)tidyprint_1.1.1.zip(r-4.5-any)
tidyprint_1.1.1.tgz(r-4.6-any)tidyprint_1.1.1.tgz(r-4.5-any)
tidyprint_1.1.1.tar.gz(r-4.7-any)tidyprint_1.1.1.tar.gz(r-4.6-any)
tidyprint_1.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
tidyprint/json (API)
| # Install 'tidyprint' in R: |
| install.packages('tidyprint', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/tidyomics/tidyprint/issues
Datasets:
- se_airway - Example SummarizedExperiment dataset
On BioConductor:tidyprint-1.1.1(bioc 3.24)tidyprint-1.0.0(bioc 3.23)
softwarevisualizationinfrastructure
Last updated from:dccb01abb0. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 177 | ||
| linux-devel | NOTE | 281 | ||
| source / vignettes | OK | 267 | ||
| linux-release | NOTE | 346 | ||
| macos-release | NOTE | 240 | ||
| macos-oldrel | NOTE | 251 | ||
| windows-devel | NOTE | 776 | ||
| windows-release | NOTE | 775 | ||
| windows-oldrel | NOTE | 744 | ||
| wasm-release | OK | 124 |
Exports:demo_tidy_messagetidy_messagetidy_print_enabledtidy_print_offtidy_print_on
Dependencies:abindBiobaseBiocGenericsclicpp11DelayedArraydplyrfansigenericsGenomicRangesglueIRangeslatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatspillarpkgconfigpurrrR6rlangS4ArraysS4VectorsSeqinfoSparseArraystringistringrSummarizedExperimenttibbletidyrtidyselectutf8vctrswithrXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| tidyprint: Custom Print Methods for SummarizedExperiment | tidyprint-package tidyprint |
| Convert SummarizedExperiment to tibble | as_tibble.SummarizedExperiment |
| Demonstrate tidy_message usage | demo_tidy_message |
| Format covariate header by distributing label across covariate columns | format_covariate_header |
| Print method for SummarizedExperiment with tidyprint styles | print.SummarizedExperiment |
| Example SummarizedExperiment dataset | se_airway |
| Custom header for SE_print_abstraction | tbl_format_header.SE_print_abstraction |
| Print a styled tidyprint message | tidy_message |
| Enable or disable tidy print for SummarizedExperiment objects | tidy_print_enabled tidy_print_off tidy_print_on tidy_print_toggle |