Package: tenXplore 1.29.0

VJ Carey

tenXplore: ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics

Perform ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics.

Authors:Vince Carey

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tenXplore.pdf |tenXplore.html✨
tenXplore/json (API)

# Install 'tenXplore' in R:
install.packages('tenXplore', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • CellTypes - CellTypes: data.frame with ids and terms
  • tenx500 - Tenx500: serialized full SummarizedExperiment for demonstration

On BioConductor:tenXplore-1.29.0(bioc 3.21)tenXplore-1.28.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologydimensionreductionprincipalcomponenttranscriptomicssinglecell

4.18 score 7 scripts 176 downloads 2 exports 113 dependencies

Last updated 2 months agofrom:4caaa52fa5. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 18 2024
R-4.5-winNOTEDec 18 2024
R-4.5-linuxNOTEDec 18 2024
R-4.4-winNOTEDec 18 2024
R-4.4-macNOTEDec 18 2024
R-4.3-winNOTEDec 18 2024
R-4.3-macNOTEDec 18 2024

Exports:se1.3MtenXplore

Dependencies:abindAnnotationDbiAnnotationHubaskpassbase64encbasiliskbasilisk.utilsBiobaseBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobbslibcachemclicommonmarkcpp11crayoncrosstalkcurlDBIdbplyrDelayedArraydigestdir.expirydplyrDTevaluatefansifastmapfilelockfontawesomefsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluegraphherehighrhtmltoolshtmlwidgetshttpuvhttrigraphIRangesjquerylibjsonliteKEGGRESTknitrlaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeontologyIndexontologyPlotontoProcopensslorg.Mm.eg.dbpaintmappillarpkgconfigplogrpngpromisespurrrR.methodsS3R.ooR.utilsR6rappdirsRcppRcppTOMLreticulateRgraphvizrlangrmarkdownrprojrootRSQLiteS4ArraysS4VectorssassshinysourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrswithrxfunxtableXVectoryamlzlibbioc

tenXplore: ontology for scRNA-seq, applied to 10x 1.3 million neurons

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered fromtenXplore.Rmdusingknitr::rmarkdownon Dec 18 2024.

Last update: 2019-06-13
Started: 2017-08-22