Package: tenXplore 1.35.0

VJ Carey

tenXplore: ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics

Perform ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics.

Authors:Vince Carey

tenXplore_1.35.0.tar.gz
tenXplore_1.35.0.zip(r-4.7)tenXplore_1.35.0.zip(r-4.6)tenXplore_1.35.0.zip(r-4.5)
tenXplore_1.35.0.tgz(r-4.6-any)tenXplore_1.35.0.tgz(r-4.5-any)
tenXplore_1.35.0.tar.gz(r-4.7-any)tenXplore_1.35.0.tar.gz(r-4.6-any)
tenXplore_1.35.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
tenXplore/json (API)

# Install 'tenXplore' in R:
install.packages('tenXplore', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • CellTypes - CellTypes: data.frame with ids and terms
  • tenx500 - Tenx500: serialized full SummarizedExperiment for demonstration

On BioConductor:tenXplore-1.35.0(bioc 3.24)tenXplore-1.34.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologydimensionreductionprincipalcomponenttranscriptomicssinglecell

4.00 score 10 scripts 426 downloads 2 exports 115 dependencies

Last updated from:dea7f9cf57. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR239
linux-devel-x86_64NOTE455
source / vignettesOK287
linux-release-x86_64NOTE459
macos-release-arm64NOTE330
macos-oldrel-arm64NOTE249
windows-develNOTE355
windows-releaseNOTE351
windows-oldrelNOTE431
wasm-releaseOK201

Exports:se1.3MtenXplore

Dependencies:abindAnnotationDbiAnnotationHubaskpassbase64encbasiliskBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobbslibcachemclicommonmarkcorocpp11crayoncrosstalkcurlDBIdbplyrDelayedArraydigestdir.expirydplyrDTellmerevaluatefastmapfilelockfontawesomefsgenericsGenomicRangesgluegraphherehighrhtmltoolshtmlwidgetshttpuvhttrhttr2igraphIRangesjquerylibjsonliteKEGGRESTknitrlaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeontologyIndexontologyPlotontoProcopensslorg.Mm.eg.dbotelpaintmappillarpkgconfigpngpromisespurrrR.methodsS3R.ooR.utilsR6rappdirsRBGLRcppRcppTOMLreticulateRgraphvizrlangrmarkdownrprojrootRSQLiteS4ArraysS4VectorsS7sassSeqinfoshinysourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8vctrswithrxfunxtableXVectoryaml

tenXplore: ontology for scRNA-seq, applied to 10x 1.3 million neurons

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered fromtenXplore.Rmdusingknitr::rmarkdownon May 14 2026.

Last update: 2019-06-13
Started: 2017-08-22