Package: tenXplore 1.29.0

VJ Carey

tenXplore: ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics

Perform ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomics.

Authors:Vince Carey

tenXplore_1.29.0.tar.gz
tenXplore_1.29.0.zip(r-4.5)tenXplore_1.29.0.zip(r-4.4)tenXplore_1.29.0.zip(r-4.3)
tenXplore_1.29.0.tgz(r-4.4-any)tenXplore_1.29.0.tgz(r-4.3-any)
tenXplore_1.29.0.tar.gz(r-4.5-noble)tenXplore_1.29.0.tar.gz(r-4.4-noble)
tenXplore_1.29.0.tgz(r-4.4-emscripten)tenXplore_1.29.0.tgz(r-4.3-emscripten)
tenXplore.pdf |tenXplore.html✨
tenXplore/json (API)

# Install 'tenXplore' in R:
install.packages('tenXplore', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • CellTypes - CellTypes: data.frame with ids and terms
  • tenx500 - Tenx500: serialized full SummarizedExperiment for demonstration

On BioConductor:tenXplore-1.29.0(bioc 3.21)tenXplore-1.28.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologydimensionreductionprincipalcomponenttranscriptomicssinglecell

4.18 score 7 scripts 140 downloads 2 exports 113 dependencies

Last updated 23 days agofrom:4caaa52fa5. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 18 2024
R-4.5-winWARNINGNov 18 2024
R-4.5-linuxWARNINGNov 18 2024
R-4.4-winWARNINGNov 18 2024
R-4.4-macWARNINGNov 18 2024
R-4.3-winWARNINGNov 18 2024
R-4.3-macWARNINGNov 18 2024

Exports:se1.3MtenXplore

Dependencies:abindAnnotationDbiAnnotationHubaskpassbase64encbasiliskbasilisk.utilsBiobaseBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobbslibcachemclicommonmarkcpp11crayoncrosstalkcurlDBIdbplyrDelayedArraydigestdir.expirydplyrDTevaluatefansifastmapfilelockfontawesomefsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluegraphherehighrhtmltoolshtmlwidgetshttpuvhttrigraphIRangesjquerylibjsonliteKEGGRESTknitrlaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeontologyIndexontologyPlotontoProcopensslorg.Mm.eg.dbpaintmappillarpkgconfigplogrpngpromisespurrrR.methodsS3R.ooR.utilsR6rappdirsRcppRcppTOMLreticulateRgraphvizrlangrmarkdownrprojrootRSQLiteS4ArraysS4VectorssassshinysourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrswithrxfunxtableXVectoryamlzlibbioc

tenXplore: ontology for scRNA-seq, applied to 10x 1.3 million neurons

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered fromtenXplore.Rmdusingknitr::rmarkdownon Nov 18 2024.

Last update: 2019-06-13
Started: 2017-08-22