Package: stepNorm 1.85.0
Yuanyuan Xiao
stepNorm: Stepwise normalization functions for cDNA microarrays
Stepwise normalization functions for cDNA microarray data.
Authors:
stepNorm_1.85.0.tar.gz
stepNorm_1.85.0.zip(r-4.7)stepNorm_1.85.0.zip(r-4.6)stepNorm_1.85.0.zip(r-4.5)
stepNorm_1.85.0.tgz(r-4.6-any)stepNorm_1.85.0.tgz(r-4.5-any)
stepNorm_1.85.0.tar.gz(r-4.7-any)stepNorm_1.85.0.tar.gz(r-4.6-any)
stepNorm_1.85.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
stepNorm/json (API)
| # Install 'stepNorm' in R: |
| install.packages('stepNorm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:stepNorm-1.85.0(bioc 3.24)stepNorm-1.84.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraytwochannelpreprocessing
Last updated from:192ef537bd. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 132 | ||
| linux-devel-x86_64 | NOTE | 168 | ||
| source / vignettes | OK | 146 | ||
| linux-release-x86_64 | NOTE | 153 | ||
| macos-release-arm64 | NOTE | 142 | ||
| macos-oldrel-arm64 | NOTE | 116 | ||
| windows-devel | NOTE | 101 | ||
| windows-release | NOTE | 95 | ||
| windows-oldrel | NOTE | 101 | ||
| wasm-release | OK | 96 |
Exports:aov2DfitcalcAICcalcBICcalcEnpfit2DWithinfitWithinloess2DfitloessfitmaCompPlate2makeStepListmedfitMedianSmoothnoFitrlm2DfitrlmfitseqWithinNormspatialMedfitsquarestepWithinNormwithinNorm
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Extract AIC from a Fitted Model | calcAIC |
| Extract BIC from a Fitted Model | calcBIC |
| Bivariate location normalization function for cDNA microarray data | fit2DWithin |
| Simple location normalization function for cDNA microarray data | fitWithin |
| Generate plate IDs | maCompPlate2 |
| Construction of a stepwise normalization list | makeStepList |
| Class "marrayFit", storing parameters and results of post-normalization cDNA microarray data | marrayFit marrayFit-class |
| Sequential within-slide normalization function | seqWithinNorm |
| Stepwise within-slide normalization function | stepWithinNorm |
| Within-slide normalization function for cDNA spotted microarrays | withinNorm |