Package: stepNorm 1.79.0
Yuanyuan Xiao
stepNorm: Stepwise normalization functions for cDNA microarrays
Stepwise normalization functions for cDNA microarray data.
Authors:
stepNorm_1.79.0.tar.gz
stepNorm_1.79.0.zip(r-4.5)stepNorm_1.79.0.zip(r-4.4)stepNorm_1.79.0.zip(r-4.3)
stepNorm_1.79.0.tgz(r-4.4-any)stepNorm_1.79.0.tgz(r-4.3-any)
stepNorm_1.79.0.tar.gz(r-4.5-noble)stepNorm_1.79.0.tar.gz(r-4.4-noble)
stepNorm_1.79.0.tgz(r-4.4-emscripten)stepNorm_1.79.0.tgz(r-4.3-emscripten)
stepNorm.pdf |stepNorm.html✨
stepNorm/json (API)
| # Install 'stepNorm' in R: |
| install.packages('stepNorm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:stepNorm-1.79.0(bioc 3.21)stepNorm-1.78.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarraytwochannelpreprocessing
Last updated 23 days agofrom:c5798e7b3c. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-win | NOTE | Oct 31 2024 |
| R-4.5-linux | NOTE | Oct 31 2024 |
| R-4.4-win | NOTE | Oct 31 2024 |
| R-4.4-mac | NOTE | Oct 31 2024 |
| R-4.3-win | NOTE | Oct 31 2024 |
| R-4.3-mac | NOTE | Oct 31 2024 |
Exports:aov2DfitcalcAICcalcBICcalcEnpfit2DWithinfitWithinloess2DfitloessfitmaCompPlate2makeStepListmedfitMedianSmoothnoFitrlm2DfitrlmfitseqWithinNormspatialMedfitsquarestepWithinNormwithinNorm
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Extract AIC from a Fitted Model | calcAIC |
| Extract BIC from a Fitted Model | calcBIC |
| Bivariate location normalization function for cDNA microarray data | fit2DWithin |
| Simple location normalization function for cDNA microarray data | fitWithin |
| Generate plate IDs | maCompPlate2 |
| Construction of a stepwise normalization list | makeStepList |
| Class "marrayFit", storing parameters and results of post-normalization cDNA microarray data | marrayFit marrayFit-class |
| Sequential within-slide normalization function | seqWithinNorm |
| Stepwise within-slide normalization function | stepWithinNorm |
| Within-slide normalization function for cDNA spotted microarrays | withinNorm |