Package: statTarget 1.43.0

Hemi Luan

statTarget: Statistical Analysis of Molecular Profiles

A streamlined tool provides a graphical user interface for quality control based signal drift correction (QC-RFSC), integration of data from multi-batch MS-based experiments, and the comprehensive statistical analysis in metabolomics and proteomics.

Authors:Hemi Luan

statTarget_1.43.0.tar.gz
statTarget_1.43.0.zip(r-4.7)statTarget_1.43.0.zip(r-4.6)statTarget_1.43.0.zip(r-4.5)
statTarget_1.43.0.tgz(r-4.6-any)statTarget_1.43.0.tgz(r-4.5-any)
statTarget_1.43.0.tar.gz(r-4.7-any)statTarget_1.43.0.tar.gz(r-4.6-any)
statTarget_1.43.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
statTarget/json (API)

# Install 'statTarget' in R:
install.packages('statTarget', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:statTarget-1.43.0(bioc 3.24)statTarget-1.42.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologymetabolomicsproteomicsmachine learninglipidomicsmassspectrometryqualitycontrolnormalizationqc-rfsccombatdifferentialexpressionbatcheffectvisualizationmultiplecomparisonpreprocessingsoftware

6.01 score 86 scripts 4 mentions 7 exports 18 dependencies

Last updated from:3db7b7e52e. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR162
linux-devel-x86_64NOTE207
source / vignettesOK161
linux-release-x86_64NOTE224
macos-release-arm64NOTE98
macos-oldrel-arm64NOTE124
windows-develNOTE93
windows-releaseNOTE102
windows-oldrelNOTE99
wasm-releaseOK138

Exports:mdsPlotpredict_RFpvimPlotrForestshiftCorshiftCor_dQCstatAnalysis

Dependencies:DEoptimRevaluatehighrimputeknitrlatticemvtnormpcaPPpdistplsplyrrandomForestRcpprobustbaseROCrrcovxfunyaml

statTarget
Welcome to statTarget ! | Package overview | Citation | What does statTarget offer statistically | Running Signal Correction (the shiftCor function) from the GUI | Running Statistical Analysis (the statAnalysis function) from the GUI | Generation of input file (the transX function) | Random Forest classfication and variable importance measures | Results of Signal Correction (ShiftCor) | References
Rendered fromstatTarget.Rmdusingknitr::rmarkdown

Last update: 2024-06-12
Started: 2016-10-07

QC-free approach with Combat method
Combat | statTargetGUI | Running Signal Correction (the shiftCor function) from the GUI | References
Rendered fromCombat.Rmdusingknitr::rmarkdown

Last update: 2019-02-17
Started: 2019-02-17

pathway analysis (mummichog)
statTarget result for pathway analysis using mummichog approach. | Pathways analysis by using MS peaks with accurate mass
Rendered frompathway_analysis.Rmdusingknitr::rmarkdown

Last update: 2019-01-15
Started: 2019-01-15