Package: statTarget 1.37.0
Hemi Luan
statTarget: Statistical Analysis of Molecular Profiles
A streamlined tool provides a graphical user interface for quality control based signal drift correction (QC-RFSC), integration of data from multi-batch MS-based experiments, and the comprehensive statistical analysis in metabolomics and proteomics.
Authors:
statTarget_1.37.0.tar.gz
statTarget_1.37.0.zip(r-4.5)statTarget_1.37.0.zip(r-4.4)statTarget_1.37.0.zip(r-4.3)
statTarget_1.37.0.tgz(r-4.4-any)statTarget_1.37.0.tgz(r-4.3-any)
statTarget_1.37.0.tar.gz(r-4.5-noble)statTarget_1.37.0.tar.gz(r-4.4-noble)
statTarget_1.37.0.tgz(r-4.4-emscripten)statTarget_1.37.0.tgz(r-4.3-emscripten)
statTarget.pdf |statTarget.html✨
statTarget/json (API)
NEWS
| # Install 'statTarget' in R: |
| install.packages('statTarget', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:statTarget-1.37.0(bioc 3.21)statTarget-1.36.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologymetabolomicsproteomicsmachine learninglipidomicsmassspectrometryqualitycontrolnormalizationqc-rfsccombatdifferentialexpressionbatcheffectvisualizationmultiplecomparisonpreprocessingsoftware
Last updated 2 months agofrom:581d4efa25. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 18 2024 |
| R-4.5-win | NOTE | Dec 18 2024 |
| R-4.5-linux | NOTE | Dec 18 2024 |
| R-4.4-win | NOTE | Dec 18 2024 |
| R-4.4-mac | NOTE | Dec 18 2024 |
| R-4.3-win | NOTE | Dec 18 2024 |
| R-4.3-mac | NOTE | Dec 18 2024 |
Exports:mdsPlotpredict_RFpvimPlotrForestshiftCorshiftCor_dQCstatAnalysis
Dependencies:DEoptimRevaluatehighrimputeknitrlatticemvtnormpcaPPpdistplsplyrrandomForestRcpprobustbaseROCrrcovxfunyaml
QC-free approach with Combat method
Rendered fromCombat.Rmdusingknitr::rmarkdownon Dec 18 2024.Last update: 2019-02-17
Started: 2019-02-17
pathway analysis (mummichog)
Rendered frompathway_analysis.Rmdusingknitr::rmarkdownon Dec 18 2024.Last update: 2019-01-15
Started: 2019-01-15
statTarget
Rendered fromstatTarget.Rmdusingknitr::rmarkdownon Dec 18 2024.Last update: 2024-06-12
Started: 2016-10-07
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Statistical Analysis of Molecular Profiles | statTarget-package statTarget |
| MDSplot in statTarget | mdsPlot |
| preidict function for random forest objects in statTarget | predict_RF |
| Gini importance and permutation-based variable importance measures plots | pvimPlot |
| Random Forest classfication in statTarget | rForest |
| shiftCor | shiftCor |
| QC-free based signal correction | shiftCor_dQC shiftCor_dQC (deprecated) |
| statAnalysis for statistical analysis for omics data or others. | statAnalysis |
