Package: ssviz 1.41.0

Diana Low

ssviz: A small RNA-seq visualizer and analysis toolkit

Small RNA sequencing viewer

Authors:Diana Low

ssviz_1.41.0.tar.gz
ssviz_1.41.0.zip(r-4.5)ssviz_1.41.0.zip(r-4.4)ssviz_1.41.0.zip(r-4.3)
ssviz_1.41.0.tgz(r-4.4-any)ssviz_1.41.0.tgz(r-4.3-any)
ssviz_1.41.0.tar.gz(r-4.5-noble)ssviz_1.41.0.tar.gz(r-4.4-noble)
ssviz_1.41.0.tgz(r-4.4-emscripten)ssviz_1.41.0.tgz(r-4.3-emscripten)
ssviz.pdf |ssviz.html
ssviz/json (API)
NEWS

# Install 'ssviz' in R:
install.packages('ssviz', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:ssviz-1.41.0(bioc 3.21)ssviz-1.40.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologysequencingrnaseqvisualizationmultiplecomparisongenetics

3.60 score 2 scripts 229 downloads 2 mentions 8 exports 62 dependencies

Last updated 22 days agofrom:6c33152332. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 19 2024
R-4.5-winNOTENov 19 2024
R-4.5-linuxNOTENov 19 2024
R-4.4-winNOTENov 19 2024
R-4.4-macNOTENov 19 2024
R-4.3-winNOTENov 19 2024
R-4.3-macNOTENov 19 2024

Exports:getCountMatrixntfreqpingpongplotDistroplotFreqplotPPplotRegionreadBam

Dependencies:askpassBHBiocGenericsBiocParallelBiostringsbitopsclicodetoolscolorspacecpp11crayoncurlfansifarverformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeopensslpillarpkgconfigplyrR6RColorBrewerRcppreshapeRhtslibrlangRsamtoolsS4VectorsscalessnowsystibbleUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc

ssviz

Rendered fromssviz.Rnwusingknitron Nov 19 2024.

Last update: 2018-08-30
Started: 2014-06-07

Readme and manuals

Help Manual

Help pageTopics
ssvizssviz-package ssviz
counts datacounts
ctrlbam datactrlbam
getCountMatrixgetCountMatrix
getCountMatrixgetCountMatrix,DataFrame-method getCountMatrix-methods
Class '"logicalORmissing"'logicalORmissing-class
ntfreqntfreq
ntfreqntfreq,DataFrame,numeric-method ntfreq-methods
pctrlbam datapctrlbam
pingpongpingpong
pingpongpingpong,DataFrame-method pingpong-methods
plotDistroplotDistro
plotDistroplotDistro,list-method plotDistro-methods
plotFreqplotFreq
plotFreqplotFreq,data.frame,logicalORmissing-method plotFreq-methods
plotPPplotPP
plotPPplotPP,list-method plotPP-methods
plotRegionplotRegion
plotRegionplotRegion,list,character-method plotRegion-methods
ptreatbam dataptreatbam
readBamreadBam
readBamreadBam,character-method readBam-methods
treatbam datatreatbam