Introduction | Installing and loading the ssviz package | Using ssviz | Further work | References
Package: ssviz 1.47.0
Diana Low
ssviz: A small RNA-seq visualizer and analysis toolkit
Small RNA sequencing viewer
Authors:
ssviz_1.47.0.tar.gz
ssviz_1.47.0.zip(r-4.7)ssviz_1.47.0.zip(r-4.6)ssviz_1.47.0.zip(r-4.5)
ssviz_1.47.0.tgz(r-4.6-any)ssviz_1.47.0.tgz(r-4.5-any)
ssviz_1.47.0.tar.gz(r-4.7-any)ssviz_1.47.0.tar.gz(r-4.6-any)
ssviz_1.47.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ssviz/json (API)
| # Install 'ssviz' in R: |
| install.packages('ssviz', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
On BioConductor:ssviz-1.47.0(bioc 3.24)ssviz-1.46.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologysequencingrnaseqvisualizationmultiplecomparisongenetics
Last updated from:220f3c2e0c. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 174 | ||
| linux-devel-x86_64 | NOTE | 309 | ||
| source / vignettes | OK | 252 | ||
| linux-release-x86_64 | NOTE | 256 | ||
| macos-release-arm64 | NOTE | 124 | ||
| macos-oldrel-arm64 | NOTE | 196 | ||
| windows-devel | NOTE | 212 | ||
| windows-release | NOTE | 213 | ||
| windows-oldrel | NOTE | 229 | ||
| wasm-release | OK | 156 |
Exports:getCountMatrixntfreqpingpongplotDistroplotFreqplotPPplotRegionreadBam
Dependencies:BHBiocGenericsBiocParallelBiostringsbitopsclicodetoolscpp11crayonfarverformatRfutile.loggerfutile.optionsgenericsGenomicRangesggplot2gluegtableIRangesisobandlabelinglambda.rlifecycleplyrR6RColorBrewerRcppreshapeRhtslibrlangRsamtoolsS4VectorsS7scalesSeqinfosnowvctrsviridisLitewithrXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| ssviz | ssviz-package ssviz |
| counts data | counts |
| ctrlbam data | ctrlbam |
| getCountMatrix | getCountMatrix |
| getCountMatrix | getCountMatrix,DataFrame-method getCountMatrix-methods |
| Class '"logicalORmissing"' | logicalORmissing-class |
| ntfreq | ntfreq |
| ntfreq | ntfreq,DataFrame,numeric-method ntfreq-methods |
| pctrlbam data | pctrlbam |
| pingpong | pingpong |
| pingpong | pingpong,DataFrame-method pingpong-methods |
| plotDistro | plotDistro |
| plotDistro | plotDistro,list-method plotDistro-methods |
| plotFreq | plotFreq |
| plotFreq | plotFreq,data.frame,logicalORmissing-method plotFreq-methods |
| plotPP | plotPP |
| plotPP | plotPP,list-method plotPP-methods |
| plotRegion | plotRegion |
| plotRegion | plotRegion,list,character-method plotRegion-methods |
| ptreatbam data | ptreatbam |
| readBam | readBam |
| readBam | readBam,character-method readBam-methods |
| treatbam data | treatbam |
