Package: ssviz 1.41.0
ssviz: A small RNA-seq visualizer and analysis toolkit
Small RNA sequencing viewer
Authors:
ssviz_1.41.0.tar.gz
ssviz_1.41.0.zip(r-4.5)ssviz_1.41.0.zip(r-4.4)ssviz_1.41.0.zip(r-4.3)
ssviz_1.41.0.tgz(r-4.4-any)ssviz_1.41.0.tgz(r-4.3-any)
ssviz_1.41.0.tar.gz(r-4.5-noble)ssviz_1.41.0.tar.gz(r-4.4-noble)
ssviz_1.41.0.tgz(r-4.4-emscripten)ssviz_1.41.0.tgz(r-4.3-emscripten)
ssviz.pdf |ssviz.html✨
ssviz/json (API)
NEWS
# Install 'ssviz' in R: |
install.packages('ssviz', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:ssviz-1.41.0(bioc 3.21)ssviz-1.40.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologysequencingrnaseqvisualizationmultiplecomparisongenetics
Last updated 22 days agofrom:6c33152332. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 19 2024 |
R-4.5-win | NOTE | Nov 19 2024 |
R-4.5-linux | NOTE | Nov 19 2024 |
R-4.4-win | NOTE | Nov 19 2024 |
R-4.4-mac | NOTE | Nov 19 2024 |
R-4.3-win | NOTE | Nov 19 2024 |
R-4.3-mac | NOTE | Nov 19 2024 |
Exports:getCountMatrixntfreqpingpongplotDistroplotFreqplotPPplotRegionreadBam
Dependencies:askpassBHBiocGenericsBiocParallelBiostringsbitopsclicodetoolscolorspacecpp11crayoncurlfansifarverformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglambda.rlatticelifecyclemagrittrMASSMatrixmgcvmimemunsellnlmeopensslpillarpkgconfigplyrR6RColorBrewerRcppreshapeRhtslibrlangRsamtoolsS4VectorsscalessnowsystibbleUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
ssviz | ssviz-package ssviz |
counts data | counts |
ctrlbam data | ctrlbam |
getCountMatrix | getCountMatrix |
getCountMatrix | getCountMatrix,DataFrame-method getCountMatrix-methods |
Class '"logicalORmissing"' | logicalORmissing-class |
ntfreq | ntfreq |
ntfreq | ntfreq,DataFrame,numeric-method ntfreq-methods |
pctrlbam data | pctrlbam |
pingpong | pingpong |
pingpong | pingpong,DataFrame-method pingpong-methods |
plotDistro | plotDistro |
plotDistro | plotDistro,list-method plotDistro-methods |
plotFreq | plotFreq |
plotFreq | plotFreq,data.frame,logicalORmissing-method plotFreq-methods |
plotPP | plotPP |
plotPP | plotPP,list-method plotPP-methods |
plotRegion | plotRegion |
plotRegion | plotRegion,list,character-method plotRegion-methods |
ptreatbam data | ptreatbam |
readBam | readBam |
readBam | readBam,character-method readBam-methods |
treatbam data | treatbam |