Package: spillR 1.9.0

Marco Guazzini

spillR: Spillover Compensation in Mass Cytometry Data

Channel interference in mass cytometry can cause spillover and may result in miscounting of protein markers. We develop a nonparametric finite mixture model and use the mixture components to estimate the probability of spillover. We implement our method using expectation-maximization to fit the mixture model.

Authors:Marco Guazzini [aut, cre], Alexander G. Reisach [aut], Sebastian Weichwald [aut], Christof Seiler [aut]

spillR_1.9.0.tar.gz
spillR_1.9.0.zip(r-4.7)spillR_1.9.0.zip(r-4.6)spillR_1.9.0.zip(r-4.5)
spillR_1.9.0.tgz(r-4.6-any)spillR_1.9.0.tgz(r-4.5-any)
spillR_1.9.0.tar.gz(r-4.7-any)spillR_1.9.0.tar.gz(r-4.6-any)
spillR_1.9.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
spillR/json (API)
NEWS

# Install 'spillR' in R:
install.packages('spillR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:spillR-1.9.0(bioc 3.24)spillR-1.8.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

flowcytometryimmunooncologymassspectrometrypreprocessingsinglecellsoftwarestatisticalmethodvisualizationregression

4.00 score 3 scripts 242 downloads 4 exports 174 dependencies

Last updated from:8db8248296. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE225
linux-devel-x86_64OK518
source / vignettesOK379
linux-release-x86_64OK502
macos-release-arm64OK274
macos-oldrel-arm64OK273
windows-develOK458
windows-releaseOK423
windows-oldrelOK398
wasm-releaseOK191

Exports:compCytofgenerate_beadgenerate_realplotDiagnostics

Dependencies:abindALLassortheadbackportsbase64encbeachmatbeeswarmBHBiobaseBiocGenericsbiocmakeBiocNeighborsBiocParallelBiocSingularbootbroomCairocarcarDataCATALYSTcirclizecliclueclustercodetoolscolorRampscolorspaceComplexHeatmapConsensusClusterPluscorrplotcowplotcpp11crayoncytolibDelayedArrayDerivdigestdir.expirydoBydoParalleldplyrdqrngdrcfarverfilelockflowCoreFlowSOMFNNforeachforecastformatRFormulafracdifffutile.loggerfutile.optionsgenericsGenomicRangesGetoptLongggbeeswarmggforceggnewscaleggplot2ggpubrggrastrggrepelggridgesggsciggsignifGlobalOptionsgluegridExtragtablegtoolsigraphIRangesirlbaisobanditeratorsjsonlitelabelinglambda.rlatticelifecyclelme4lmtestmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmgcvmicrobenchmarkminqamodelrmultcompmvtnormnlmenloptrnnetnnlsnumDerivpbkrtestpheatmappillarpkgconfigplotrixplyrpngpolyclippolynompurrrquantregR6raggrbibutilsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppMLRcppProgressRdpackreformulasreshape2Rhdf5librjsonrlangRProtoBufLibRSpectrarstatixrsvdRtsneS4ArraysS4VectorsS7sandwichScaledMatrixscalesscaterscuttleSeqinfoshapeSingleCellExperimentsitmosnowSparseArraySparseMspatstat.univarspatstat.utilsstringistringrSummarizedExperimentsurvivalsystemfontstextshapingTH.datatibbletidyrtidyselecttimeDatetweenrurcautf8uwotvctrsviporviridisviridisLitewithrXMLXVectorzoo

spillR Vignette

Marco Guazzini, Alexander G. Reisach, Sebastian Weichwald, Christof Seiler

Rendered fromspillR-vignette.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2024-03-18
Started: 2023-06-15