Introduction | Loading the library and data structure | Plotting Intensities vs. concentration: Ivsc() | Plotting Intensities vs. free energies: IvsDG() | Plotting all concentrations: collapse()
Package: spikeLI 2.73.0
Enrico Carlon
spikeLI: Affymetrix Spike-in Langmuir Isotherm Data Analysis Tool
SpikeLI is a package that performs the analysis of the Affymetrix spike-in data using the Langmuir Isotherm. The aim of this package is to show the advantages of a physical-chemistry based analysis of the Affymetrix microarray data compared to the traditional methods. The spike-in (or Latin square) data for the HGU95 and HGU133 chipsets have been downloaded from the Affymetrix web site. The model used in the spikeLI package is described in details in E. Carlon and T. Heim, Physica A 362, 433 (2006).
Authors:
spikeLI_2.73.0.tar.gz
spikeLI_2.73.0.zip(r-4.7)spikeLI_2.73.0.zip(r-4.6)spikeLI_2.73.0.zip(r-4.5)
spikeLI_2.73.0.tgz(r-4.6-any)spikeLI_2.73.0.tgz(r-4.5-any)
spikeLI_2.73.0.tar.gz(r-4.7-any)spikeLI_2.73.0.tar.gz(r-4.6-any)
spikeLI_2.73.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
spikeLI/json (API)
| # Install 'spikeLI' in R: |
| install.packages('spikeLI', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- conc133 - Concentration 95
- conc95 - Concentration 95
- hgu - Selected Probe Set data
- SPIKE_IN - Spike-in Probe-Set Names
- SPIKE_IN95 - Set of spike-in genes contained in the HGU95 dataset
- SPIKE_INA - Artificial Spike-in probesets
- SPIKE_INB - Bacteria Spike-in probeset names
- SPIKE_INH - Human Spike-in probe-set names
On BioConductor:spikeLI-2.73.0(bioc 3.24)spikeLI-2.72.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:7561b9e2fc. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 136 | ||
| linux-devel-x86_64 | NOTE | 157 | ||
| source / vignettes | OK | 144 | ||
| linux-release-x86_64 | NOTE | 167 | ||
| macos-release-arm64 | NOTE | 71 | ||
| macos-oldrel-arm64 | NOTE | 72 | ||
| windows-devel | NOTE | 87 | ||
| windows-release | NOTE | 61 | ||
| windows-oldrel | NOTE | 56 | ||
| wasm-release | OK | 83 |
Dependencies:
