Package: spikeLI 2.65.0

Enrico Carlon

spikeLI: Affymetrix Spike-in Langmuir Isotherm Data Analysis Tool

SpikeLI is a package that performs the analysis of the Affymetrix spike-in data using the Langmuir Isotherm. The aim of this package is to show the advantages of a physical-chemistry based analysis of the Affymetrix microarray data compared to the traditional methods. The spike-in (or Latin square) data for the HGU95 and HGU133 chipsets have been downloaded from the Affymetrix web site. The model used in the spikeLI package is described in details in E. Carlon and T. Heim, Physica A 362, 433 (2006).

Authors:Delphine Baillon, Paul Leclercq <[email protected]>, Sarah Ternisien, Thomas Heim, Enrico Carlon <[email protected]>

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spikeLI.pdf |spikeLI.html✨
spikeLI/json (API)

# Install 'spikeLI' in R:
install.packages('spikeLI', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • SPIKE_IN - Spike-in Probe-Set Names
  • SPIKE_IN95 - Set of spike-in genes contained in the HGU95 dataset
  • SPIKE_INA - Artificial Spike-in probesets
  • SPIKE_INB - Bacteria Spike-in probeset names
  • SPIKE_INH - Human Spike-in probe-set names
  • conc133 - Concentration 95
  • conc95 - Concentration 95
  • hgu - Selected Probe Set data

On BioConductor:spikeLI-2.65.0(bioc 3.20)spikeLI-2.64.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

3 exports 0.71 score 0 dependencies

Last updated 2 months agofrom:044f531539

Exports:collapseIvscIvsDG

Dependencies:

spikeLI

Rendered fromspikeLI.Rnwusingutils::Sweaveon Jun 25 2024.

Last update: 2013-11-01
Started: 2013-11-01