Package: spatialDmelxsim 1.19.0

Michael Love

spatialDmelxsim: Spatial allelic expression counts for fly cross embryo

Spatial allelic expression counts from Combs & Fraser (2018), compiled into a SummarizedExperiment object. This package contains data of allelic expression counts of spatial slices of a fly embryo, a Drosophila melanogaster x Drosophila simulans cross. See the CITATION file for the data source, and the associated script for how the object was constructed from publicly available data.

Authors:Michael Love [aut, cre]

spatialDmelxsim_1.19.0.tar.gz
spatialDmelxsim_1.19.0.tar.gz(r-4.7-any)spatialDmelxsim_1.19.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
spatialDmelxsim/json (API)

# Install 'spatialDmelxsim' in R:

install.packages('spatialDmelxsim', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mikelove/spatialdmelxsim/issues

On BioConductor:spatialDmelxsim-1.19.0(data/experiment 3.24)spatialDmelxsim-1.18.0(data/experiment 3.23)

experimenthub sequencingdata rnaseqdata expressiondata drosophila_melanogaster_data geo datapkg

4.00 score 2 scripts 1 exports 67 dependencies

Last updated from:fbba8be924. Checks:1 WARNING, 3 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	WARNING	154
linux-devel	OK	319
source / vignettes	OK	419
linux-release	OK	360

Exports:spatialDmelxsim

Dependencies:abind AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr DelayedArray dplyr ExperimentHub fastmap filelock generics GenomicRanges glue httr httr2 IRanges jsonlite KEGGREST lattice lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang RSQLite S4Arrays S4Vectors Seqinfo SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

spatialDmelxsim

Allelic counts of D melanogaster x D simulans cross | Additional details

Rendered fromspatialDmelxsim.Rmdusingknitr::rmarkdown

Last update: 2021-07-01
Started: 2021-06-16

Citation

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Help Manual

Help page	Topics
Spatial allelic expression counts for fly cross embryo	spatialDmelxsim