Package: spatialDE 1.11.0
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Gabriele Sales
spatialDE: R wrapper for SpatialDE
SpatialDE is a method to find spatially variable genes (SVG) from spatial transcriptomics data. This package provides wrappers to use the Python SpatialDE library in R, using reticulate and basilisk.
Authors:
spatialDE_1.11.0.tar.gz
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spatialDE_1.11.0.tgz(r-4.4-any)spatialDE_1.11.0.tgz(r-4.3-any)
spatialDE_1.11.0.tar.gz(r-4.5-noble)spatialDE_1.11.0.tar.gz(r-4.4-noble)
spatialDE_1.11.0.tgz(r-4.4-emscripten)spatialDE_1.11.0.tgz(r-4.3-emscripten)
spatialDE.pdf |spatialDE.html✨
spatialDE/json (API)
# Install 'spatialDE' in R: |
install.packages('spatialDE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sales-lab/spatialde/issues
- MOB_sample_info - Mouse Olfactory Bulb sample metadata
- Rep11_MOB_0 - Mouse Olfactory Bulb spatial gene expression data
On BioConductor:spatialDE-1.11.0(bioc 3.20)spatialDE-1.10.0(bioc 3.19)
Last updated 2 months agofrom:8c1ba06e18
Exports:FSV_sigmockSVGmodel_searchmodelSearchmultiGenePlotsregress_outrunspatial_patternsspatialDEspatialPatternsstabilize
Dependencies:abindaskpassbackportsbasiliskbasilisk.utilsBiobaseBiocFileCacheBiocGenericsbitbit64blobcachemcheckmateclicolorspacecpp11crayoncurlDBIdbplyrDelayedArraydir.expirydplyrfansifarverfastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2ggrepelgluegridExtragtableherehttrIRangesisobandjsonlitelabelinglatticelifecyclemagickmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplogrpngpurrrR6rappdirsRColorBrewerRcppRcppTOMLreticulaterjsonrlangrprojrootRSQLiteS4ArraysS4VectorsscalesSingleCellExperimentSparseArraySpatialExperimentstringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc