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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "spatialDE" in publications use:'
type: software
license: MIT
title: 'spatialDE: R wrapper for SpatialDE'
version: 1.11.0
doi: 10.18129/B9.bioc.spatialDE
identifiers:
- type: doi
  value: 10.32614/CRAN.package.spatialDE
abstract: SpatialDE is a method to find spatially variable genes (SVG) from spatial
  transcriptomics data. This package provides wrappers to use the Python SpatialDE
  library in R, using reticulate and basilisk.
authors:
- family-names: Corso
  given-names: Davide
  email: davidecrs92@gmail.com
  orcid: https://orcid.org/0000-0001-8845-3693
- family-names: Malfait
  given-names: Milan
  email: milan.malfait94@gmail.com
  orcid: https://orcid.org/0000-0001-9144-3701
- family-names: Moses
  given-names: Lambda
  email: dlu2@caltech.edu
  orcid: https://orcid.org/0000-0002-7092-9427
- family-names: Sales
  given-names: Gabriele
  email: gabriele.sales@unipd.it
preferred-citation:
  type: manual
  title: 'spatialDE: R wrapper for SpatialDE'
  authors:
  - family-names: Corso
    given-names: Davide
    email: davidecrs92@gmail.com
    orcid: https://orcid.org/0000-0001-8845-3693
  - family-names: Malfait
    given-names: Milan
    email: milan.malfait94@gmail.com
    orcid: https://orcid.org/0000-0001-9144-3701
  - family-names: Moses
    given-names: Lambda
    email: dlu2@caltech.edu
    orcid: https://orcid.org/0000-0002-7092-9427
  year: '2024'
  url: http://www.bioconductor.org/packages/spatialDE
  notes: R package version 1.11.0
  doi: 10.18129/B9.bioc.spatialDE
repository: https://bioc.r-universe.dev
repository-code: https://github.com/sales-lab/spatialDE
commit: 8c1ba06e188ea4915e67ee699852d7a486775ff6
url: https://bioconductor.org/packages/spatialDE/
date-released: '2024-02-08'
contact:
- family-names: Sales
  given-names: Gabriele
  email: gabriele.sales@unipd.it
references:
- type: article
  title: 'SpatialDE: identification of spatially variable genes'
  authors:
  - family-names: Svensson
    given-names: Valentine
  - family-names: Teichmann
    given-names: Sarah A.
  - family-names: Stegle
    given-names: Oliver
  copyright: 2018 Nature Publishing Group, a division of Macmillan Publishers Limited.
    All Rights Reserved.
  year: '2018'
  journal: Nature Methods
  volume: '15'
  issue: '5'
  doi: 10.1038/nmeth.4636
  issn: 1548-7105
  url: https://www.nature.com/articles/nmeth.4636
  start: '343'
  end: '346'