Package: sparsenetgls 1.25.0
Irene Zeng
sparsenetgls: Using Gaussian graphical structue learning estimation in generalized least squared regression for multivariate normal regression
The package provides methods of combining the graph structure learning and generalized least squares regression to improve the regression estimation. The main function sparsenetgls() provides solutions for multivariate regression with Gaussian distributed dependant variables and explanatory variables utlizing multiple well-known graph structure learning approaches to estimating the precision matrix, and uses a penalized variance covariance matrix with a distance tuning parameter of the graph structure in deriving the sandwich estimators in generalized least squares (gls) regression. This package also provides functions for assessing a Gaussian graphical model which uses the penalized approach. It uses Receiver Operative Characteristics curve as a visualization tool in the assessment.
Authors:
sparsenetgls_1.25.0.tar.gz
sparsenetgls_1.25.0.zip(r-4.5)sparsenetgls_1.25.0.zip(r-4.4)sparsenetgls_1.25.0.zip(r-4.3)
sparsenetgls_1.25.0.tgz(r-4.4-any)sparsenetgls_1.25.0.tgz(r-4.3-any)
sparsenetgls_1.25.0.tar.gz(r-4.5-noble)sparsenetgls_1.25.0.tar.gz(r-4.4-noble)
sparsenetgls_1.25.0.tgz(r-4.4-emscripten)sparsenetgls_1.25.0.tgz(r-4.3-emscripten)
sparsenetgls.pdf |sparsenetgls.html✨
sparsenetgls/json (API)
NEWS
# Install 'sparsenetgls' in R: |
install.packages('sparsenetgls', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- bandprec - Bandprec data for vignette
On BioConductor:sparsenetgls-1.25.0(bioc 3.21)sparsenetgls-1.24.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologygraphandnetworkregressionmetabolomicscopynumbervariationmassspectrometryproteomicssoftwarevisualization
Last updated 23 days agofrom:76afb55c6c. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 19 2024 |
R-4.5-win | OK | Nov 19 2024 |
R-4.5-linux | OK | Nov 19 2024 |
R-4.4-win | OK | Nov 19 2024 |
R-4.4-mac | OK | Nov 19 2024 |
R-4.3-win | OK | Nov 19 2024 |
R-4.3-mac | OK | Nov 19 2024 |
Exports:assess_directconvertbetaglassonet2lassoglmnetpath_result_for_rocplot_rocplotsnglssparsenetgls
Dependencies:clicodetoolscpp11foreachglmnetgluehugeigraphiteratorslatticelifecyclemagrittrMASSMatrixpkgconfigRcppRcppEigenrlangshapesurvivalvctrs
Readme and manuals
Help Manual
Help page | Topics |
---|---|
The assess_direct() function | assess_direct |
bandprec data for vignette | bandprec |
The convertbeta() function | convertbeta |
The glassonet2() function | glassonet2 |
The lassoglmnet() function | lassoglmnet |
The path_result_for_roc() function | path_result_for_roc |
The plot_roc() function | plot_roc |
The plotsngls() function | plotsngls |
The sparsenetgls() function | sparsenetgls |