Package: smoothclust 1.9.1

Lukas M. Weber

smoothclust: smoothclust

Method for identification of spatial domains and spatially-aware clustering in spatial transcriptomics data. The method generates spatial domains with smooth boundaries by smoothing gene expression profiles across neighboring spatial locations, followed by unsupervised clustering. Spatial domains consisting of consistent mixtures of cell types may then be further investigated by applying cell type compositional analyses or differential analyses.

Authors:Lukas M. Weber [aut, cre]

smoothclust_1.9.1.tar.gz
smoothclust_1.9.1.zip(r-4.7)smoothclust_1.9.1.zip(r-4.6)smoothclust_1.9.1.zip(r-4.5)
smoothclust_1.9.1.tgz(r-4.6-any)smoothclust_1.9.1.tgz(r-4.5-any)
smoothclust_1.9.1.tar.gz(r-4.7-any)smoothclust_1.9.1.tar.gz(r-4.6-any)
smoothclust_1.9.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
smoothclust/json (API)
NEWS

# Install 'smoothclust' in R:

install.packages('smoothclust', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lmweber/smoothclust/issues

On BioConductor:smoothclust-1.9.1(bioc 3.24)smoothclust-1.8.0(bioc 3.23)

spatial singlecell transcriptomics geneexpression clustering

4.51 score 1 stars 13 scripts 279 downloads 2 exports 61 dependencies

Last updated from:76b863ed5e. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	223
linux-devel-x86_64	WARNING	422
source / vignettes	OK	342
linux-release-x86_64	WARNING	442
macos-release-arm64	WARNING	306
macos-oldrel-arm64	WARNING	209
windows-devel	WARNING	421
windows-release	WARNING	440
windows-oldrel	WARNING	369
wasm-release	OK	192