Package: smoothclust 1.9.6

Lukas M. Weber

smoothclust: smoothclust

Tools for spatial domain analysis in spatial transcriptomics data. Includes spatial smoothing of gene expression profiles for downstream clustering and a boundary density (BD) metric for summarizing spatial domain organization. The smoothing function returns processed expression values for subsequent clustering. BD requires only spatial coordinates and categorical labels, and provides local and sample-level summaries of label transitions.

Authors:Lukas M. Weber [aut, cre]

smoothclust_1.9.6.tar.gz
smoothclust_1.9.6.zip(r-4.7-any)smoothclust_1.9.6.zip(r-4.6-any)smoothclust_1.9.6.zip(r-4.5-any)
smoothclust_1.9.6.tgz(r-4.6-any)smoothclust_1.9.6.tgz(r-4.5-any)
smoothclust_1.9.6.tar.gz(r-4.7-any)smoothclust_1.9.6.tar.gz(r-4.6-any)
smoothclust_1.9.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
smoothclust/json (API)

# Install 'smoothclust' in R:

install.packages('smoothclust', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lmweber/smoothclust/issues

On BioConductor:smoothclust-1.9.3(bioc 3.24)smoothclust-1.8.1(bioc 3.23)

spatial singlecell transcriptomics geneexpression clustering

4.60 score 1 stars 10 scripts 334 downloads 2 exports 60 dependencies

Last updated from:b06dd0c5d2. Checks:8 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	365
linux-devel	NOTE	319
source / vignettes	OK	494
linux-release	NOTE	493
macos-release	NOTE	195
macos-oldrel	NOTE	207
windows-devel	NOTE	324
windows-release	NOTE	396
windows-oldrel	NOTE	307
wasm-release	OK	225