simpIntLists-package | ArabidopsisBioGRIDInteractionEntrezId | ArabidopsisBioGRIDInteractionOfficial | ArabidopsisBioGRIDInteractionUniqueId | C.ElegansBioGRIDInteractionEntrezId | C.ElegansBioGRIDInteractionOfficial | C.ElegansBioGRIDInteractionUniqueId | findInteractionList | FruitFlyBioGRIDInteractionEntrezId | FruitFlyBioGRIDInteractionOfficial | FruitFlyBioGRIDInteractionUniqueId | HumanBioGRIDInteractionEntrezId | HumanBioGRIDInteractionOfficial | HumanBioGRIDInteractionUniqueId | MouseBioGRIDInteractionEntrezId | MouseBioGRIDInteractionOfficial | MouseBioGRIDInteractionUniqueId | S.PombeBioGRIDInteractionEntrezId | S.PombeBioGRIDInteractionOfficial | S.PombeBioGRIDInteractionUniqueId | YeastBioGRIDInteractionEntrezId | YeastBioGRIDInteractionOfficial | YeastBioGRIDInteractionUniqueId | Index
Package: simpIntLists 1.49.0
Kircicegi Korkmaz
simpIntLists: The package contains BioGRID interactions for various organisms in a simple format
The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with "name" containing name of the gene/protein and "interactors" containing the list of genes/proteins interacting with it.
Authors:
simpIntLists_1.49.0.tar.gz
simpIntLists_1.49.0.tar.gz(r-4.7-any)simpIntLists_1.49.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
simpIntLists/json (API)
| # Install 'simpIntLists' in R: |
| install.packages('simpIntLists', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- ArabidopsisBioGRIDInteractionEntrezId - BioGRID interactions for thale cress (Arabidopsis thaliana), entrez ids are used as identifiers
- ArabidopsisBioGRIDInteractionOfficial - BioGRID interactions for thale cress (Arabidopsis thaliana), official names are used as identifiers
- ArabidopsisBioGRIDInteractionUniqueId - BioGRID interactions for thale cress (Arabidopsis thaliana), unique ids are used as identifiers
- C.ElegansBioGRIDInteractionEntrezId - BioGRID interactions for C.elegans (Caenorhabditis elegans), entrez ids are used as identifiers
- C.ElegansBioGRIDInteractionOfficial - BioGRID interactions for C.elegans (Caenorhabditis elegans), official names are used as identifiers
- C.ElegansBioGRIDInteractionUniqueId - BioGRID interactions for C.elegans (Caenorhabditis elegans), unique ids are used as identifiers
- FruitFlyBioGRIDInteractionEntrezId - BioGRID interactions for Fruit fly (Drosophila melanogaster), entrez ids are used as identifiers
- FruitFlyBioGRIDInteractionOfficial - BioGRID interactions for Fruit fly (Drosophila melanogaster), official names are used as identifiers
- FruitFlyBioGRIDInteractionUniqueId - BioGRID interactions for Fruit fly (Drosophila melanogaster), unique ids (systematic names) are used as identifiers
- HumanBioGRIDInteractionEntrezId - BioGRID interactions for human (Homo sapiens), entrez ids are used as identifiers
- HumanBioGRIDInteractionOfficial - BioGRID interactions for human (Homo sapiens), official names are used as identifiers
- HumanBioGRIDInteractionUniqueId - BioGRID interactions for human (Homo sapiens), unique ids (systematic names) are used as identifiers
- MouseBioGRIDInteractionEntrezId - BioGRID interactions for Mouse (Mus musculus), entrez ids are used as identifiers
- MouseBioGRIDInteractionOfficial - BioGRID interactions for Mouse (Mus musculus), official names ids are used as identifiers
- MouseBioGRIDInteractionUniqueId - BioGRID interactions for Mouse (Mus musculus), unique ids (systematic names) are used as identifiers
- S.PombeBioGRIDInteractionEntrezId - BioGRID interactions for fission yeast (Schizosaccharomyces pombe), entrez ids are used as identifiers
- S.PombeBioGRIDInteractionOfficial - BioGRID interactions for fission yeast (Schizosaccharomyces pombe), official names are used as identifiers
- S.PombeBioGRIDInteractionUniqueId - BioGRID interactions for fission yeast (Schizosaccharomyces pombe), unique ids (systematic names) are used as identifiers
- YeastBioGRIDInteractionEntrezId - BioGRID interactions for budding yeast (Saccharomyces cerevisiae), entrez ids are used as identifiers
- YeastBioGRIDInteractionOfficial - BioGRID interactions for budding yeast (Saccharomyces cerevisiae), official names are used as identifiers
- YeastBioGRIDInteractionUniqueId - BioGRID interactions for budding yeast (Saccharomyces cerevisiae), unique ids (systematic names) are used as identifiers
On BioConductor:simpIntLists-1.49.0(data/experiment 3.24)simpIntLists-1.48.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdataarabidopsis_thaliana_datadatapkg
Last updated from:0a71dbcaaa. Checks:1 ERROR, 2 NOTE, 1 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 114 | ||
| linux-devel | NOTE | 260 | ||
| source / vignettes | OK | 146 | ||
| linux-release | NOTE | 259 |
Exports:findInteractionList
Dependencies:
