shinyMethyl: interactive visualization of Illumina 450K methylation arrays
Introduction | Example dataset | Creating your own dataset visualization | Step 1: creating a RGChannelSet object with minfi | Step 2: creating a shinyMethylSet object | Step 3: launching the interactive shiny interface | How to use the different \Biocpkg{shinyMethyl} panels | Advanced option: visualization of normalized data | What does a shinyMethylSet contain? | Figures | Quality control figure | Array design panel | Sex prediction algorithm panel | Principal Component Analysis (PCA) | Type I/II probe bias | Comparison of raw and normalized data | Visualization of batch effects in the TCGA HNSCC dataset | Visualization of cancer/normal differences in the TCGA HNSCC dataset | Session info | References
Rendered fromshinyMethyl.Rmdusingknitr::rmarkdown