To cite shinyMethyl in publications use:

  Fortin J, Fertig EJ, Hansen KD (2014). “shinyMethyl: interactive
  quality control of Illumina 450k DNA methylation arrays in R.”
  _F1000Research_, *3*, 175. doi:10.12688/f1000research.4680.2
  <https://doi.org/10.12688/f1000research.4680.2>.

A BibTeX entry for LaTeX users is

  @Article{shinymethyl,
    author = {Jean-Philippe Fortin and Elana J. Fertig and Kasper D. Hansen},
    title = {{shinyMethyl: interactive quality control of Illumina 450k DNA methylation arrays in R}},
    journal = {F1000Research},
    year = {2014},
    volume = {3},
    pages = {175},
    doi = {10.12688/f1000research.4680.2},
    pubmed = {25285208},
  }