Package: scrapper 0.99.7
scrapper: Bindings to C++ Libraries for Single-Cell Analysis
Implements R bindings to C++ code for analyzing single-cell (expression) data, mostly from various libscran libraries. Each function performs an individual step in the single-cell analysis workflow, ranging from quality control to clustering and marker detection. It is mostly intended for other Bioconductor package developers to build more user-friendly end-to-end workflows.
Authors:
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scrapper.pdf |scrapper.html✨
scrapper/json (API)
# Install 'scrapper' in R: |
install.packages('scrapper', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:scrapper-0.99.6(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
normalizationrnaseqsoftwaregeneexpressiontranscriptomicssinglecellbatcheffectqualitycontroldifferentialexpressionfeatureextractionprincipalcomponentclustering
Last updated 4 days agofrom:84264c084e. Checks:OK: 7 NOTE: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 26 2024 |
R-4.5-win-x86_64 | NOTE | Oct 26 2024 |
R-4.5-linux-x86_64 | NOTE | Oct 26 2024 |
R-4.4-win-x86_64 | OK | Oct 26 2024 |
R-4.4-mac-x86_64 | OK | Oct 26 2024 |
R-4.4-mac-aarch64 | OK | Oct 26 2024 |
R-4.3-win-x86_64 | OK | Oct 26 2024 |
R-4.3-mac-x86_64 | OK | Oct 26 2024 |
R-4.3-mac-aarch64 | OK | Oct 26 2024 |
Exports:aggregateAcrossCellsbuildSnnGraphcenterSizeFactorschooseHighlyVariableGeneschoosePseudoCountclusterGraphclusterKmeanscombineFactorscomputeAdtQcMetricscomputeClrm1FactorscomputeCrisprQcMetricscomputeRnaQcMetricscorrectMnnfilterAdtQcMetricsfilterCrisprQcMetricsfilterRnaQcMetricsfitVarianceTrendmodelGeneVariancesnormalizeCountsrunAllNeighborStepsrunPcarunTsnerunUmapsanitizeSizeFactorsscaleByNeighborsscoreGeneSetscoreMarkerssubsampleByNeighborssuggestAdtQcThresholdssuggestCrisprQcThresholdssuggestRnaQcThresholdssummarizeEffectstsnePerplexityToNeighbors
Dependencies:abindassortheadbeachmatBiocGenericsBiocNeighborsclicpp11crayonDelayedArrayglueigraphIRangeslatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatspkgconfigRcpprlangS4ArraysS4VectorsSparseArrayvctrsXVectorzlibbioc