Package: scTHI 1.17.0

Michele Ceccarelli

scTHI: Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data

scTHI is an R package to identify active pairs of ligand-receptors from single cells in order to study,among others, tumor-host interactions. scTHI contains a set of signatures to classify cells from the tumor microenvironment.

Authors:Francesca Pia Caruso [aut], Michele Ceccarelli [aut, cre]

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scTHI.pdf |scTHI.html✨
scTHI/json (API)
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Bug tracker:https://github.com/miccec/scthi/issues

On BioConductor:scTHI-1.17.0(bioc 3.20)scTHI-1.16.0(bioc 3.19)

bioconductor-package

7 exports 0.61 score 11 dependencies 1 mentions

Last updated 2 months agofrom:dacba00c8d

Exports:scTHI_plotClusterscTHI_plotPairsscTHI_plotResultscTHI_runTsnescTHI_scoreTME_classificationTME_plot

Dependencies:BHBiocParallelcodetoolscpp11formatRfutile.loggerfutile.optionslambda.rRcppRtsnesnow