Package: scTHI 1.19.0
scTHI: Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data
scTHI is an R package to identify active pairs of ligand-receptors from single cells in order to study,among others, tumor-host interactions. scTHI contains a set of signatures to classify cells from the tumor microenvironment.
Authors:
scTHI_1.19.0.tar.gz
scTHI_1.19.0.zip(r-4.5)scTHI_1.19.0.zip(r-4.4)scTHI_1.19.0.zip(r-4.3)
scTHI_1.19.0.tgz(r-4.4-any)scTHI_1.19.0.tgz(r-4.3-any)
scTHI_1.19.0.tar.gz(r-4.5-noble)scTHI_1.19.0.tar.gz(r-4.4-noble)
scTHI_1.19.0.tgz(r-4.4-emscripten)scTHI_1.19.0.tgz(r-4.3-emscripten)
scTHI.pdf |scTHI.html✨
scTHI/json (API)
NEWS
# Install 'scTHI' in R: |
install.packages('scTHI', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/miccec/scthi/issues
On BioConductor:scTHI-1.19.0(bioc 3.21)scTHI-1.18.0(bioc 3.20)
Last updated 2 months agofrom:f1906f24b5. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 18 2024 |
R-4.5-win | OK | Dec 18 2024 |
R-4.5-linux | OK | Dec 18 2024 |
R-4.4-win | OK | Dec 18 2024 |
R-4.4-mac | OK | Dec 18 2024 |
R-4.3-win | OK | Dec 18 2024 |
R-4.3-mac | OK | Dec 18 2024 |
Exports:scTHI_plotClusterscTHI_plotPairsscTHI_plotResultscTHI_runTsnescTHI_scoreTME_classificationTME_plot
Dependencies:BHBiocParallelcodetoolscpp11formatRfutile.loggerfutile.optionslambda.rRcppRtsnesnow
Readme and manuals
Help Manual
Help page | Topics |
---|---|
single cell Tumor Hist Interaction (scTHI) | scTHI-package scTHI |
scTHI_plotCluster | scTHI_plotCluster |
scTHI_plotPairs | scTHI_plotPairs |
scTHI_plotResult | scTHI_plotResult |
scTHI_runTsne | scTHI_runTsne |
scTHI_score | scTHI_score |
TME_classification | TME_classification |
TME_plot | TME_plot |