Package: scTHI 1.19.0

Michele Ceccarelli

scTHI: Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data

scTHI is an R package to identify active pairs of ligand-receptors from single cells in order to study,among others, tumor-host interactions. scTHI contains a set of signatures to classify cells from the tumor microenvironment.

Authors:Francesca Pia Caruso [aut], Michele Ceccarelli [aut, cre]

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scTHI.pdf |scTHI.html
scTHI/json (API)
NEWS

# Install 'scTHI' in R:
install.packages('scTHI', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/miccec/scthi/issues

On BioConductor:scTHI-1.19.0(bioc 3.21)scTHI-1.18.0(bioc 3.20)

softwaresinglecell

3.90 score 4 stars 2 scripts 130 downloads 1 mentions 7 exports 11 dependencies

Last updated 2 months agofrom:f1906f24b5. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 18 2024
R-4.5-winOKDec 18 2024
R-4.5-linuxOKDec 18 2024
R-4.4-winOKDec 18 2024
R-4.4-macOKDec 18 2024
R-4.3-winOKDec 18 2024
R-4.3-macOKDec 18 2024

Exports:scTHI_plotClusterscTHI_plotPairsscTHI_plotResultscTHI_runTsnescTHI_scoreTME_classificationTME_plot

Dependencies:BHBiocParallelcodetoolscpp11formatRfutile.loggerfutile.optionslambda.rRcppRtsnesnow

Using scTHI

Rendered fromvignette.Rmdusingknitr::rmarkdownon Dec 18 2024.

Last update: 2023-04-20
Started: 2019-04-16

Readme and manuals

Help Manual

Help pageTopics
single cell Tumor Hist Interaction (scTHI)scTHI-package scTHI
scTHI_plotClusterscTHI_plotCluster
scTHI_plotPairsscTHI_plotPairs
scTHI_plotResultscTHI_plotResult
scTHI_runTsnescTHI_runTsne
scTHI_scorescTHI_score
TME_classificationTME_classification
TME_plotTME_plot