{ "_id": "6a1afa0f1d7bb097a09fbcd2", "Package": "scTHI", "Title": "Indentification of significantly activated ligand-receptor\ninteractions across clusters of cells from single-cell RNA\nsequencing data", "Version": "1.25.0", "Authors@R": "c(person(\"Francesca Pia\", \"Caruso\", email = \"francescapia.caruso@gmail.com\", role = c(\"aut\")),\nperson(\"Michele\", \"Ceccarelli\", email = \"m.ceccarelli@gmail.com\", role = c(\"aut\", \"cre\")))", "Description": "scTHI is an R package to identify active pairs of\nligand-receptors from single cells in order to study,among\nothers, tumor-host interactions. scTHI contains a set of\nsignatures to classify cells from the tumor microenvironment.", "License": "GPL-2", "Encoding": "UTF-8", "RoxygenNote": "6.1.1.9000", "VignetteBuilder": "knitr", "biocViews": "Software,SingleCell", "BugReports": "https://github.com/miccec/scTHI/issues", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:52:00 UTC", "RemoteUrl": "https://github.com/bioc/scTHI", "RemoteRef": "HEAD", "RemoteSha": "d2fa1dc894d94d3498a26a1f8c7bf0875d1f22ee", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 09:49:44 UTC", "User": "root" }, "Author": "Francesca Pia Caruso [aut],\nMichele Ceccarelli [aut, cre]", "Maintainer": "Michele Ceccarelli ", "MD5sum": "5f3f151c70fd5dc8fa656d63e5f7b302", "_user": "bioc", "_type": "src", "_file": "scTHI_1.25.0.tar.gz", "_fileid": "265eaa7031feae4e4ba01b33b6fa476b84ecdb45bd41258dad4b313d5db6976f", "_filesize": 611410, "_sha256": "265eaa7031feae4e4ba01b33b6fa476b84ecdb45bd41258dad4b313d5db6976f", "_created": "2026-05-30T09:49:44.000Z", "_published": "2026-05-30T14:54:07.123Z", "_jobs": [ { "job": 78640744766, "time": 145, "config": "bioc-checks", "r": "4.6.0", "check": "NOTE", "artifact": "7307526007" }, { "job": 78640744779, "time": 217, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7307531485" }, { "job": 78640744781, "time": 238, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7307533881" }, { "job": 78640744800, "time": 135, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7309030717" }, { "job": 78640744787, "time": 133, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7309030949" }, { "job": 78639983180, "time": 194, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7307305315" }, { "job": 78640744786, "time": 117, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7307522845" }, { "job": 78640744794, "time": 135, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7307523329" }, { "job": 78640744792, "time": 141, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7307523976" }, { "job": 78640744849, "time": 120, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7307522287" } ], "_bioccheck": { "error": 0, "warning": 0, "note": 12 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26677143642", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/scTHI", "_commit": { "id": "d2fa1dc894d94d3498a26a1f8c7bf0875d1f22ee", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380720 }, "_maintainer": { "name": "Michele Ceccarelli", "email": "m.ceccarelli@gmail.com", "login": "miccec", "twitter": "@mceccarelli", "description": "\n Professor at University of Miami\n", "uuid": 2706649 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0", "role": "Depends" }, { "package": "BiocParallel", "role": "Imports" }, { "package": "Rtsne", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "scTHI.data", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.25.0", "bioc": "3.24" }, { "branch": "release", "version": "1.24.0", "bioc": "3.23" } ], "_topics": [ "software", "singlecell" ], "_stars": 6, "_contributors": [ { "user": "miccec", "count": 65, "uuid": 2706649 }, { "user": "fpcaruso", "count": 1, "uuid": 49145177 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 310, "source": "https://www.bioconductor.org/packages/stats/bioc/scTHI" }, "_mentions": 1, "_devurl": "https://github.com/miccec/scthi", "_searchresults": 7, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/scTHI.html", "manual.pdf" ], "_homeurl": "https://github.com/miccec/scthi", "_realowner": "bioc", "_cranurl": false, "_exports": [ "scTHI_plotCluster", "scTHI_plotPairs", "scTHI_plotResult", "scTHI_runTsne", "scTHI_score", "TME_classification", "TME_plot" ], "_help": [ { "page": "scTHI", "title": "single cell Tumor Hist Interaction (scTHI)", "topics": [ "scTHI-package", "scTHI" ] }, { "page": "scTHI_plotCluster", "title": "scTHI_plotCluster", "topics": [ "scTHI_plotCluster" ] }, { "page": "scTHI_plotPairs", "title": "scTHI_plotPairs", "topics": [ "scTHI_plotPairs" ] }, { "page": "scTHI_plotResult", "title": "scTHI_plotResult", "topics": [ "scTHI_plotResult" ] }, { "page": "scTHI_runTsne", "title": "scTHI_runTsne", "topics": [ "scTHI_runTsne" ] }, { "page": "scTHI_score", "title": "scTHI_score", "topics": [ "scTHI_score" ] }, { "page": "TME_classification", "title": "TME_classification", "topics": [ "TME_classification" ] }, { "page": "TME_plot", "title": "TME_plot", "topics": [ "TME_plot" ] } ], "_rundeps": [ "BH", "BiocParallel", "codetools", "cpp11", "formatR", "futile.logger", "futile.options", "lambda.r", "Rcpp", "Rtsne", "snow" ], "_vignettes": [ { "source": "vignette.Rmd", "filename": "vignette.html", "title": "Using scTHI", "author": "Michele Ceccarelli, Francesca Pia Caruso", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installation", "Examples", "Analysis of H3K27M glioma from Fibin et al. Science 2018", "Input Data", "Run scTHI.score", "Tumor microenvironment classification", "Session Info", "References" ], "created": "2019-04-16 14:36:13", "modified": "2023-04-20 09:00:06", "commits": 5 } ], "_score": 4.079181246047625, "_indexed": true, "_nocasepkg": "scthi", "_universes": [ "bioc", "miccec" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.25.0", "date": "2026-05-30T10:31:05.000Z", "distro": "noble", "commit": "d2fa1dc894d94d3498a26a1f8c7bf0875d1f22ee", "fileid": "3c66bb1de7d2c5b8c911dd80430ebca8642288facb599446aa49838c66986bdf", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677143642" }, { "r": "4.6.0", "os": "linux", "version": "1.25.0", "date": "2026-05-30T10:31:31.000Z", "distro": "noble", "commit": "d2fa1dc894d94d3498a26a1f8c7bf0875d1f22ee", "fileid": "51895fdc61ceaab404a2621c8e86090eb037ce0d425432cb4e77f2e9dbdbeec1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677143642" }, { "r": "4.5.3", "os": "mac", "version": "1.25.0", "date": "2026-05-30T14:53:06.000Z", "commit": "d2fa1dc894d94d3498a26a1f8c7bf0875d1f22ee", "fileid": "447f9d239999ba30848c04308291ec156c025a0365dc2f4cbf3e1313c26620dd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677143642" }, { "r": "4.6.0", "os": "mac", "version": "1.25.0", "date": "2026-05-30T14:53:02.000Z", "commit": "d2fa1dc894d94d3498a26a1f8c7bf0875d1f22ee", "fileid": "55dac99bdc2e6f13044d65ffab26c51d8385aa95e3477047fff9b8874d507f08", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677143642" }, { "r": "4.6.0", "os": "wasm", "version": "1.25.0", "date": "2026-05-30T10:30:12.000Z", "commit": "d2fa1dc894d94d3498a26a1f8c7bf0875d1f22ee", "fileid": "73b2253a9aae9618cfb1b0c9edc9f846129126e3a942c97f98e3c81c71d285ec", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677143642" }, { "r": "4.7.0", "os": "win", "version": "1.25.0", "date": "2026-05-30T10:29:21.000Z", "commit": "d2fa1dc894d94d3498a26a1f8c7bf0875d1f22ee", "fileid": "b1ecde1e900d5e89231464fffe196b2c60e9c3ccd349b855c1568e12c7c0a304", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677143642" }, { "r": "4.5.3", "os": "win", "version": "1.25.0", "date": "2026-05-30T10:29:24.000Z", "commit": "d2fa1dc894d94d3498a26a1f8c7bf0875d1f22ee", "fileid": "3d943c85d686a3281fe229778c75d042ce2dcd39e8d8eb0bd3938f10d6e1fad4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677143642" }, { "r": "4.6.0", "os": "win", "version": "1.25.0", "date": "2026-05-30T10:29:15.000Z", "commit": "d2fa1dc894d94d3498a26a1f8c7bf0875d1f22ee", "fileid": "5c1d145c4e0b1658fdb19ef2eb2d4f4129890edae12d3f03aac5b8d68c6fb318", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26677143642" } ] }