Package: scBubbletree 1.7.16
![](https://r-universe.dev/static/nobody.jpg)
Simo Kitanovski
scBubbletree: Quantitative visual exploration of scRNA-seq data
scBubbletree is a quantitative method for visual exploration of scRNA-seq data. It preserves biologically meaningful properties of scRNA-seq data, such as local and global cell distances, as well as the density distribution of cells across the sample. scBubbletree is scalable and avoids the overplotting problem, and is able to visualize diverse cell attributes derived from multiomic single-cell experiments. Importantly, Importantly, scBubbletree is easy to use and to integrate with popular approaches for scRNA-seq data analysis.
Authors:
scBubbletree_1.7.16.tar.gz
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scBubbletree_1.7.16.tgz(r-4.4-any)scBubbletree_1.7.16.tgz(r-4.3-any)
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scBubbletree.pdf |scBubbletree.html✨
scBubbletree/json (API)
NEWS
# Install 'scBubbletree' in R: |
install.packages('scBubbletree', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/snaketron/scbubbletree/issues
On BioConductor:scBubbletree-1.7.16(bioc 3.20)scBubbletree-1.6.0(bioc 3.19)
Last updated 15 days agofrom:32e7a2aaca
Exports:compare_bubbletreesget_bubbletree_dummyget_bubbletree_graphget_bubbletree_kmeansget_cat_tilesget_giniget_gini_kget_kget_num_tilesget_num_violinsget_r
Dependencies:abindapeaplotaskpassbase64encBHBiocParallelbitopsbslibcachemcaToolscliclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurldata.tabledeldirdigestdotCall64dplyrdqrngevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomeformatRfsfutile.loggerfutile.optionsfuturefuture.applygenericsggfunggplot2ggplotifyggrepelggridgesggtreeglobalsgluegoftestgplotsgridExtragridGraphicsgtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglambda.rlaterlatticelazyevalleidenlifecyclelistenvlmtestmagrittrMASSMatrixmatrixStatsmemoisemgcvmimeminiUImunsellnlmeopensslparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisesproxypurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRtsnesassscalesscattermoresctransformSeuratSeuratObjectshinysitmosnowsourcetoolsspspamspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.utilsstringistringrsurvivalsystensortibbletidyrtidyselecttidytreetinytextreeioutf8uwotvctrsviridisLitewithrxfunxtableyamlyulab.utilszoo