NEWS

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scBubbletree 1.7.21

• new abstract
• new vignette
• new function: get_num_cell_tiles Changes after version 1.71.21 (17 Sep, 2024)
• scBubbletree paper accepted in BMC bioinformatics Changes after version 1.71.22 (20 Sep, 2024)
• simplified tree visualizations added in outout as object: tree_simple

scBubbletree 1.7.2

• bubbletree comparison function get_bubbletree_comparison
• main functions simplified and defaults changed
• documentation updated

scBubbletree 1.3.1

• vignette checks, minor modification

scBubbletree 1.1.8

• Manhattan distance metric implemented
• other linkage functions for clustering implemented
• tracking timestamps for clustering, bubbletree construction, end

scBubbletree 0.99.18

• renaming function get_bubbletree_louvain -> get_bubbletree_graph
• renaming parameter louvain_algorithm -> algorithm
• contact email changed
• vignette adjusted -> inputs vignette removed
• function name changed in unit tests, namespace, man files, etc.

scBubbletree 0.99.17

• package passed review, added to devel

scBubbletree 0.99.15-0.99.16

• remove unnecessary dependency from DESCRIPTION
• added vignette demonstrating how to get the main input of scBubbletree
• minor bugfixes

scBubbletree 0.99.13-0.99.14

• More unit tests
• Automatic x-axis ordering (by hclust) of labels in get_cat_tiles and get_num_tiles turned off

scBubbletree 0.99.10-12

• Addressed notes/review raised by Bioconductor reviewer, 1st round (link: https://github.com/Bioconductor/Contributions/issues/2781)

scBubbletree 0.99.9

• Passed checks

scBubbletree 0.99.0

• Submitted to Bioconductor