Introduction | Acknowledgments | Version Info | R serialization | saveRDS and readRDS | Reading RDS files in Python | Cross-release stability | HDF5-backed storage | Saving with HDF5Array | SummarizedExperiment and AnnData | The alabaster ecosystem | saveObject and readObject | Validation with takane | BED format for ranges | Writing BED files | Saving metadata columns | Saving Seqinfo separately | Propagating object metadata | Summary and recommendations | Session info
Package: savingBiocObjects 0.99.1
Michael Love
savingBiocObjects: Saving Bioconductor Objects for Sharing
Documentation and guidance on strategies for saving and sharing Bioconductor objects, covering RDS serialization, HDF5-backed storage, the alabaster ecosystem for cross-language interoperability, exporting genomic ranges to standard formats, and preserving object metadata.
Authors:
savingBiocObjects_0.99.1.tar.gz
savingBiocObjects_0.99.1.zip(r-4.7-any)savingBiocObjects_0.99.1.zip(r-4.6-any)savingBiocObjects_0.99.1.zip(r-4.5-any)
savingBiocObjects_0.99.1.tgz(r-4.6-any)savingBiocObjects_0.99.1.tgz(r-4.5-any)
savingBiocObjects_0.99.1.tar.gz(r-4.7-any)savingBiocObjects_0.99.1.tar.gz(r-4.6-any)
savingBiocObjects_0.99.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
savingBiocObjects/json (API)
| # Install 'savingBiocObjects' in R: |
| install.packages('savingBiocObjects', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mikelove/savingbiocobjects/issues
Pkgdown/docs site:https://mikelove.github.io
Last updated from:e27c5ffa48. Checks:1 WARNING, 9 OK. Indexed: yes.
A new build is currently in progress.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 141 | ||
| linux-devel | OK | 293 | ||
| source / vignettes | OK | 237 | ||
| linux-release | OK | 254 | ||
| macos-release | OK | 146 | ||
| macos-oldrel | OK | 134 | ||
| windows-devel | OK | 130 | ||
| windows-release | OK | 157 | ||
| windows-oldrel | OK | 126 | ||
| wasm-release | OK | 136 |
Exports:
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
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