Package: sampleClassifierData 1.37.0

Khadija El Amrani

sampleClassifierData: Pre-processed data for use with the sampleClassifier package

This package contains two microarray and two RNA-seq datasets that have been preprocessed for use with the sampleClassifier package. The RNA-seq data are derived from Fagerberg et al. (2014) and the Illumina Body Map 2.0 data. The microarray data are derived from Roth et al. (2006) and Ge et al. (2005).

Authors:Khadija El Amrani

sampleClassifierData_1.37.0.tar.gz
sampleClassifierData_1.37.0.tar.gz(r-4.7-any)sampleClassifierData_1.37.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
sampleClassifierData/json (API)

# Install 'sampleClassifierData' in R:

install.packages('sampleClassifierData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

se_micro_refmat - Microarray gene expression data set
se_micro_testmat - Microarray gene expression data set
se_rnaseq_refmat - RNA-seq gene expression data set
se_rnaseq_testmat - RNA-seq gene expression data set

On BioConductor:sampleClassifierData-1.37.0(data/experiment 3.24)sampleClassifierData-1.36.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimentdata expressiondata microarraydata sequencingdata rnaseqdata arrayexpress datapkg

3.30 score 8 scripts 0 exports 17 dependencies

Last updated from:665f8e2430. Checks:1 ERROR, 3 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	ERROR	145
linux-devel	OK	175
source / vignettes	OK	251
linux-release	OK	205

Exports:

Dependencies:abind Biobase BiocGenerics DelayedArray generics GenomicRanges IRanges lattice Matrix MatrixGenerics matrixStats S4Arrays S4Vectors Seqinfo SparseArray SummarizedExperiment XVector

sampleClassifierData Introduction

1 Introduction | 2 Data overview | 3 Data pre-processing

Rendered fromsampleClassifierData.Rnwusingutils::Sweave

Last update: 2017-01-24
Started: 2017-01-24

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Pre-processed data for use with the sampleClassifier package	sampleClassifierData-package sampleClassifierData
microarray gene expression data set	se_micro_refmat
microarray gene expression data set	se_micro_testmat
RNA-seq gene expression data set	se_rnaseq_refmat
RNA-seq gene expression data set	se_rnaseq_testmat