Package: rols 3.9.3

Sehyun Oh

rols: An R interface to the Ontology Lookup Service

The rols package is an interface to the Ontology Lookup Service (OLS) to access and query hundred of ontolgies directly from R.

Authors:Laurent Gatto [aut], Sehyun Oh [cre], Tiage Chedraoui Silva [ctb], Andrew Clugston [ctb], Levi Waldron [ctb]

rols_3.9.3.tar.gz
rols_3.9.3.zip(r-4.7-any)rols_3.9.3.zip(r-4.6-any)rols_3.9.3.zip(r-4.5-any)
rols_3.9.3.tgz(r-4.6-any)rols_3.9.3.tgz(r-4.5-any)
rols_3.9.3.tar.gz(r-4.7-any)rols_3.9.3.tar.gz(r-4.6-any)
rols_3.9.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rols/json (API)

# Install 'rols' in R:

install.packages('rols', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/shbrief/rols/issues

Pkgdown/docs site:https://shbrief.github.io

On CRAN:

immunooncology software annotation massspectrometry go

7.02 score 11 stars 156 scripts 1.7k downloads 1 mentions 43 exports 17 dependencies

Last updated from:64433bed3e. Checks:1 WARNING, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	181
linux-devel	OK	572
source / vignettes	OK	258
linux-release	OK	395
macos-release	OK	302
macos-oldrel	OK	294
windows-devel	OK	537
windows-release	OK	385
windows-oldrel	OK	507
wasm-release	OK	136

Exports:allRows ancestors as.olsTerm.data.frame as.olsTerms.data.frame charIsCVParam children cvCharToCVPar CVParam descendants isObsolete isRoot lapply olsConfig olsDesc olsLinks olsLoaded olsNamespace olsOntologies olsOntology olsPrefix olsProperties olsRows olsRows<-olsSearch OlsSearch olsStatus olsTerm olsTerms olsTitle olsUpdated olsVersion ontologyUrl parents show termDesc termId termLabel termLinks termNamespace termOntology termPrefix termSynonym unique

Dependencies:askpass Biobase BiocGenerics cli curl generics glue httr2 jsonlite lifecycle magrittr openssl R6 rlang sys vctrs withr

An R interface to the Ontology Lookup Service

Rendered fromrols.Rmdusingknitr::rmarkdown

Last update: 2024-04-26
Started: 2016-03-13

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Controlled Vocabulary	as.character.CVParam charIsCVParam cvCharToCVPar CVParam rep,CVParam-method show,CVParam-method
olsOntologies	as.data.frame.olsOntologies lapply,olsOntologies-method length,olsOntologies-method olsConfig olsConfig,olsOntology olsConfig,olsOntology-method olsDesc olsDesc,character olsDesc,character-method olsDesc,olsOntologies olsDesc,olsOntologies-method olsDesc,olsOntology olsDesc,olsOntology-method olsLinks olsLinks,olsOntology olsLinks,olsOntology-method olsLoaded olsLoaded,character olsLoaded,character-method olsLoaded,olsOntologies olsLoaded,olsOntologies-method olsLoaded,olsOntology olsLoaded,olsOntology-method olsNamespace olsNamespace,character olsNamespace,character-method olsNamespace,olsOntologies olsNamespace,olsOntologies-method olsNamespace,olsOntology olsNamespace,olsOntology-method olsOntologies olsOntologies,missing-method olsOntology olsOntology,character-method olsOntology,olsOntology-method olsPrefix olsPrefix,character olsPrefix,character-method olsPrefix,olsOntologies olsPrefix,olsOntologies-method olsPrefix,olsOntology olsPrefix,olsOntology-method olsStatus olsStatus,character olsStatus,character-method olsStatus,olsOntologies olsStatus,olsOntologies-method olsStatus,olsOntology olsStatus,olsOntology-method olsTitle olsTitle,character olsTitle,character-method olsTitle,olsOntologies olsTitle,olsOntologies-method olsTitle,olsOntology olsTitle,olsOntology-method olsUpdated olsUpdated,character olsUpdated,character-method olsUpdated,olsOntologies olsUpdated,olsOntologies-method olsUpdated,olsOntology olsUpdated,olsOntology-method olsVersion olsVersion,character olsVersion,character-method olsVersion,olsOntologies olsVersion,olsOntologies-method olsVersion,olsOntology olsVersion,olsOntology-method ontologyUrl ontologyUrl,character ontologyUrl,character-method ontologyUrl,olsOntology ontologyUrl,olsOntology-method show,olsOntologies-method show,olsOntology-method [,olsOntologies-method [[,olsOntologies-method
Term Properties	length,olsProperties-method olsProperties olsProperties,character olsProperties,character-method olsProperties,length olsProperties,olsOntology olsProperties,olsOntology-method olsProperties,olsTerm olsProperties,olsTerm-method olsProperties,olsTerms olsProperties,olsTerms-method olsProperty show,olsProperties-method show,olsProperty-method
Querying OLS	'olsRows<-' .OlsSearch allRows as.data.frame.OlsSearch olsRows olsRows<- OlsSearch olsSearch show,OlsSearch-method
Ontology Terms	ancestors as.olsTerm.data.frame as.olsTerms.data.frame children descendants isObsolete isObsolete,olsTerm isObsolete,olsTerm-method isObsolete,olsTerms isObsolete,olsTerms-method isRoot isRoot,olsTerm isRoot,olsTerm-method isRoot,olsTerms isRoot,olsTerms-method lapply,olsTerms-method length,olsTerms-method olsTerm olsTerm,character-method olsTerm,olsOntology-method olsTerms olsTerms,character olsTerms,character-method olsTerms,olsOntology olsTerms,olsOntology-method parents show,olsTerm-method show,olsTerms-method termDesc termDesc,olsTerm termDesc,olsTerm-method termDesc,olsTerms termDesc,olsTerms-method termId termId,olsTerm termId,olsTerm-method termId,olsTerms termId,olsTerms-method termLabel termLabel,olsTerm termLabel,olsTerm-method termLabel,olsTerms termLabel,olsTerms-method termLinks termLinks,olsTerm termLinks,olsTerm-method termNamespace termNamespace,olsTerm termNamespace,olsTerm-method termNamespace,olsTerms termNamespace,olsTerms-method termOntology termOntology,olsTerm termOntology,olsTerm-method termOntology,olsTerms termOntology,olsTerms-method termPrefix termPrefix,olsTerm termPrefix,olsTerm-method termPrefix,olsTerms termPrefix,olsTerms-method termSynonym termSynonym,olsTerm termSynonym,olsTerm-method termSynonym,olsTerms termSynonym,olsTerms-method unique,olsTerms-method [,olsTerms-method [[,olsTerms-method