Package: rnaseqcomp 1.35.0

Mingxiang Teng

rnaseqcomp: Benchmarks for RNA-seq Quantification Pipelines

Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.

Authors:Mingxiang Teng and Rafael A. Irizarry

rnaseqcomp_1.35.0.tar.gz
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rnaseqcomp.pdf |rnaseqcomp.html✨
rnaseqcomp/json (API)
NEWS

# Install 'rnaseqcomp' in R:
install.packages('rnaseqcomp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/tengmx/rnaseqcomp/issues

Datasets:
  • simdata - Example of Quantifications on Simulation Data

On BioConductor:rnaseqcomp-1.35.0(bioc 3.20)rnaseqcomp-1.34.0(bioc 3.19)

bioconductor-package

6 exports 0.91 score 1 dependencies 2 mentions

Last updated 2 months agofrom:c4a6a4ead0

Exports:plot2TXplotFCplotNEplotROCplotSDsignalCalibrate

Dependencies:RColorBrewer

The rnaseqcomp user's guide

| Mingxiang Teng [email protected] | Rafael A. Irizarry [email protected] | Department of Biostatistics, Dana-Farber Cancer Institute, | Harvard T.H. Chan School Public Health, Boston, MA, USA

Rendered fromrnaseqcomp.Rmdusingknitr::rmarkdownon Jun 30 2024.

Last update: 2020-03-07
Started: 2015-06-30