Package: rnaEditr 1.23.0

Lanyu Zhang

rnaEditr: Statistical analysis of RNA editing sites and hyper-editing regions

RNAeditr analyzes site-specific RNA editing events, as well as hyper-editing regions. The editing frequencies can be tested against binary, continuous or survival outcomes. Multiple covariate variables as well as interaction effects can also be incorporated in the statistical models.

Authors:Lanyu Zhang [aut, cre], Gabriel Odom [aut], Tiago Silva [aut], Lissette Gomez [aut], Lily Wang [aut]

rnaEditr_1.23.0.tar.gz
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rnaEditr_1.23.0.tgz(r-4.6-any)rnaEditr_1.23.0.tgz(r-4.5-any)
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manual.pdf |manual.html✨
card.svg |card.png
rnaEditr/json (API)
NEWS

# Install 'rnaEditr' in R:
install.packages('rnaEditr', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/transbioinfolab/rnaeditr/issues

Datasets:
  • rnaedit_df - Example breast cancer RNA editing dataset.
  • t_rnaedit_df - Transposed breast cancer example dataset.

On BioConductor:rnaEditr-1.23.0(bioc 3.24)rnaEditr-1.22.0(bioc 3.23)

genetargetepigeneticsdimensionreductionfeatureextractionregressionsurvivalrnaseq

4.78 score 3 stars 9 scripts 342 downloads 27 exports 127 dependencies

Last updated from:121a510af9. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE217
linux-devel-x86_64WARNING379
source / vignettesOK335
linux-release-x86_64WARNING428
macos-release-arm64WARNING243
macos-oldrel-arm64WARNING259
windows-develWARNING282
windows-releaseWARNING274
windows-oldrelWARNING290
wasm-releaseOK162

Exports:AddMetaDataAllCloseByRegionsAllCoeditedRegionsAnnotateResultsCountSamplesPerGroupCreateEditingTableCreateOutputDFCreateRdropFindCorrelatedRegionsGetMinPairwiseCorGetSitesLocationsMakeModelFormulaMarkCoeditedSitesMaxSitesMeanSitesMedianSitesOrderSitesByLocationPC1SitesPlotEditingCorrelationsSingleCloseByRegionSingleCoeditedRegionSitesToRegionSummarizeAllRegionsSummarizeSingleRegionTestAssociationsTestSingleRegionTransformToGR

Dependencies:abindAnnotationDbiaskpassbackportsBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobbootbroombumphuntercachemcigarilloclicliprcodetoolscorrplotcpp11crayoncurlDBIDelayedArraydigestdoRNGdplyrfastmapforcatsforeachformatRformula.toolsfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesglmnetgluehavenhmshttrIRangesiteratorsjomojsonliteKEGGRESTlambda.rlatticelifecyclelimmalme4locfitlogistfmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmicemimeminqamitmlnlmenloptrnnetnumDerivopenssloperator.toolsordinalpanpillarpkgconfigplyrpngprettyunitsprogresspurrrR6rbibutilsRcppRcppEigenRCurlRdpackreadrreformulasrestfulrRhtslibrjsonrlangrngtoolsrpartRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfoshapesnowSparseArraystatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbucminfutf8vctrsvroomwithrXMLXVectoryaml

Introduction to rnaEditr

Lanyu Zhang, Gabriel Odom, Lily Wang

Rendered fromintroduction_to_rnaEditr.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2020-10-07
Started: 2020-09-26