{
  "_id": "6a1ae8861d7bb097a09f215d",
  "Package": "rnaEditr",
  "Title": "Statistical analysis of RNA editing sites and hyper-editing\nregions",
  "Version": "1.23.0",
  "Authors@R": "c(\nperson(\"Lanyu\", \"Zhang\", email = \"jennyzly2016@gmail.com\", role = c(\"aut\", \"cre\")),\nperson(\"Gabriel\", \"Odom\", email = \"gabriel.odom@fiu.edu\", role = c(\"aut\")),\nperson(\"Tiago\", \"Silva\", email = \"tiagochst@gmail.com\", role = c(\"aut\")),\nperson(\"Lissette\", \"Gomez\", email = \"lxg255@miami.edu\", role = c(\"aut\")),\nperson(\"Lily\", \"Wang\", email = \"lily.wangg@gmail.com\", role = c(\"aut\"))\n)",
  "Description": "RNAeditr analyzes site-specific RNA editing events, as\nwell as hyper-editing regions. The editing frequencies can be\ntested against binary, continuous or survival outcomes.\nMultiple covariate variables as well as interaction effects can\nalso be incorporated in the statistical models.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "LazyData": "false",
  "RoxygenNote": "7.1.1",
  "biocViews": "GeneTarget, Epigenetics, DimensionReduction,\nFeatureExtraction, Regression, Survival, RNASeq",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/TransBioInfoLab/rnaEditr",
  "BugReports": "https://github.com/TransBioInfoLab/rnaEditr/issues",
  "Config/pak/sysreqs": "cmake make libbz2-dev libicu-dev liblzma-dev\nlibpng-dev libxml2-dev libssl-dev libx11-dev xz-utils\nzlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:53:58 UTC",
  "RemoteUrl": "https://github.com/bioc/rnaEditr",
  "RemoteRef": "HEAD",
  "RemoteSha": "121a510af990ebf67c6a50368f2b3e014046348e",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-30 09:37:06 UTC",
    "User": "root"
  },
  "Author": "Lanyu Zhang [aut, cre],\nGabriel Odom [aut],\nTiago Silva [aut],\nLissette Gomez [aut],\nLily Wang [aut]",
  "Maintainer": "Lanyu Zhang <jennyzly2016@gmail.com>",
  "MD5sum": "20d81d81acd7ac035f67954843803957",
  "_user": "bioc",
  "_type": "src",
  "_file": "rnaEditr_1.23.0.tar.gz",
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  "_created": "2026-05-30T09:37:06.000Z",
  "_published": "2026-05-30T13:39:18.396Z",
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    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
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    "email": "jennyzly2016@gmail.com",
    "login": "lanyuzhang16",
    "description": "",
    "uuid": 45209316
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  "_owner": "bioc",
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  "_updates": [
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      "n": 1
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    {
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      "bioc": "3.23"
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    "epigenetics",
    "dimensionreduction",
    "featureextraction",
    "regression",
    "survival",
    "rnaseq"
  ],
  "_stars": 3,
  "_contributors": [
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      "count": 12,
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  "_userbio": {
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    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
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    "source": "https://www.bioconductor.org/packages/stats/bioc/rnaEditr"
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  "_devurl": "https://github.com/transbioinfolab/rnaeditr",
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  "_rbuild": "4.6.0",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
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    "extra/readme.md",
    "extra/rnaEditr.html",
    "manual.pdf"
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  "_homeurl": "https://github.com/transbioinfolab/rnaeditr",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "AddMetaData",
    "AllCloseByRegions",
    "AllCoeditedRegions",
    "AnnotateResults",
    "CountSamplesPerGroup",
    "CreateEditingTable",
    "CreateOutputDF",
    "CreateRdrop",
    "FindCorrelatedRegions",
    "GetMinPairwiseCor",
    "GetSitesLocations",
    "MakeModelFormula",
    "MarkCoeditedSites",
    "MaxSites",
    "MeanSites",
    "MedianSites",
    "OrderSitesByLocation",
    "PC1Sites",
    "PlotEditingCorrelations",
    "SingleCloseByRegion",
    "SingleCoeditedRegion",
    "SitesToRegion",
    "SummarizeAllRegions",
    "SummarizeSingleRegion",
    "TestAssociations",
    "TestSingleRegion",
    "TransformToGR"
  ],
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      "title": "Extract clusters of RNA editing sites located closely in genomic regions.",
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      "page": "AllCoeditedRegions",
      "title": "Extracts contiguous co-edited genomic regions from input genomic regions .",
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      "topics": [
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  "_vignettes": [
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      "source": "introduction_to_rnaEditr.Rmd",
      "filename": "introduction_to_rnaEditr.html",
      "title": "Introduction to rnaEditr",
      "author": "Lanyu Zhang, Gabriel Odom, Lily Wang",
      "engine": "knitr::rmarkdown",
      "headings": [
        "1 Installation",
        "2 Datasets",
        "3 Site-specific analysis",
        "3.1 Testing all edited sites",
        "3.2 Annotate results",
        "4 Region-based analysis",
        "4.1 Input regions",
        "4.2 Find close-by regions",
        "4.3 Find co-edited regions",
        "4.4 Summarize all regions",
        "4.5 Test all regions",
        "4.6 Annotate results",
        "5 Further examples of function TestAssociations in rnaEditr",
        "6 Session information"
      ],
      "created": "2020-09-26 16:54:51",
      "modified": "2020-10-07 02:35:53",
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