Package: rigvf 0.99.6

Michael Love

rigvf: R interface to the IGVF Catalog

The IGVF Catalog provides data on the impact of genomic variants on function. The `rigvf` package provides an interface to the IGVF Catalog, allowing easy integration with Bioconductor resources.

Authors:Martin Morgan [aut], Michael Love [aut, cre], NIH NHGRI UM1HG012003 [fnd]

rigvf_0.99.6.tar.gz
rigvf_0.99.6.zip(r-4.5)rigvf_0.99.6.zip(r-4.4)rigvf_0.99.6.zip(r-4.3)
rigvf_0.99.6.tgz(r-4.5-any)rigvf_0.99.6.tgz(r-4.4-any)rigvf_0.99.6.tgz(r-4.3-any)
rigvf_0.99.6.tar.gz(r-4.5-noble)rigvf_0.99.6.tar.gz(r-4.4-noble)
rigvf_0.99.6.tgz(r-4.4-emscripten)rigvf_0.99.6.tgz(r-4.3-emscripten)
rigvf.pdf |rigvf.html✨
rigvf/json (API)
NEWS

# Install 'rigvf' in R:

install.packages('rigvf', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/igvf/rigvf/issues

Pkgdown site:https://igvf.github.io

On BioConductor:rigvf-0.99.6(bioc 3.21)

thirdpartyclient annotation variantannotation functionalgenomics generegulation genomicvariation genetarget

4.70 score 6 downloads 9 exports 43 dependencies

Last updated 13 days agofrom:d61b381079. Checks:1 OK, 8 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Mar 27 2025
R-4.5-win	NOTE	Mar 27 2025
R-4.5-mac	NOTE	Mar 27 2025
R-4.5-linux	NOTE	Mar 27 2025
R-4.4-win	NOTE	Mar 27 2025
R-4.4-mac	NOTE	Mar 27 2025
R-4.4-linux	NOTE	Mar 27 2025
R-4.3-win	NOTE	Mar 27 2025
R-4.3-mac	NOTE	Mar 27 2025

Exports:db_edges db_gene_elements db_gene_variants db_nodes element_genes elements gene_elements gene_variants variant_genes

Dependencies:askpass BiocGenerics cachem cli cpp11 curl dplyr fansi fastmap generics GenomeInfoDb GenomeInfoDbData GenomicRanges glue httr httr2 IRanges jsonlite lifecycle magrittr memoise mime openssl pillar pkgconfig purrr R6 rappdirs rjsoncons rlang S4Vectors stringi stringr sys tibble tidyr tidyselect UCSC.utils utf8 vctrs whisker withr XVector

Accessing data from the IGVF Catalog

Rendered fromrigvf.Rmdusingknitr::rmarkdownon Mar 27 2025.

Last update: 2025-03-19
Started: 2025-03-10

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Internal interface to ArangoDB REST API	arango arango_auth arango_collections arango_cursor arango_request
Query the IGVF Catalog via REST API	catalog_queries elements element_genes gene_elements gene_variants variant_genes
Query the IGVF Catalog via ArangoDB	db_edges db_gene_elements db_gene_variants db_nodes db_queries
Package configuration global variable management	rigvf rigvf_config