Package: rSWeeP 1.19.0

Camila P Perico

rSWeeP: Spaced Words Projection (SWeeP)

"Spaced Words Projection (SWeeP)" is a method for representing biological sequences using vectors preserving inter-sequence comparability.

Authors:Camila Pereira Perico [com, cre, aut, cph], Danrley Rafael Fernandes [aut], Mariane Gonçalves Kulik [aut], Júlia Formighieri Varaschin [aut], Camilla Reginatto de Pierri [aut], Ricardo Assunção Vialle [aut], Roberto Tadeu Raittz [aut, cph]

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rSWeeP.pdf |rSWeeP.html✨
rSWeeP/json (API)
NEWS

# Install 'rSWeeP' in R:
install.packages('rSWeeP', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:rSWeeP-1.19.0(bioc 3.21)rSWeeP-1.18.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

4.65 score 3 scripts 164 downloads 6 exports 24 dependencies

Last updated 23 days agofrom:f6bf6d803c. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 18 2024
R-4.5-winOKNov 18 2024
R-4.5-linuxOKNov 18 2024
R-4.4-winOKNov 18 2024
R-4.4-macOKNov 18 2024
R-4.3-winOKNov 18 2024
R-4.3-macOKNov 18 2024

Exports:extractHDVorthBasePCCIPMPGSWeePSWeePlite

Dependencies:askpassBiocGenericsBiostringscodetoolscrayoncurldoParallelforeachgenericsGenomeInfoDbGenomeInfoDbDatahttrIRangesiteratorsjsonlitemimeopensslR6S4VectorsstringisysUCSC.utilsXVectorzlibbioc

rSWeeP: Alignment-free method for vectorising biological sequences

Camila Pereira Perico, Danrley Rafael Fernandes, Julia Formighieri Varaschin, Camilla Reginatto De Pierri, Mariane Gonçalves Kulik, Ricardo Assunção Vialle, Roberto Tadeu Raittz

Rendered fromrSWeeP.Rmdusingknitr::rmarkdownon Nov 18 2024.

Last update: 2024-08-17
Started: 2019-06-25

Readme and manuals

Help Manual

Help pageTopics
rSWeeP - Alignment-free method for vectorising biological sequencesrSWeeP-package rSWeeP
Function for obtaining the HDV (High Dimensional Vector) matrixextractHDV extractHDV,AAStringSet-method extractHDV,BString-method extractHDV,BStringSet-method extractHDV,character-method extractHDV,DNAStringSet-method extractHDV,RNAStringSet-method
Generate a orthonormal matrixorthBase
PhyloTaxonomic Consistency Cophenetic IndexPCCI
Percentage of Mono or Paraphyletic GroupsPMPG
Spaced Words ProjectionSWeeP SWeeP,AAStringSet-method SWeeP,array-method SWeeP,BString-method SWeeP,BStringSet-method SWeeP,character-method SWeeP,dgCMatrix-method SWeeP,DNAStringSet-method SWeeP,integer-method SWeeP,matrix-method SWeeP,RNAStringSet-method
Spaced Words Projection liteSWeePlite SWeePlite,AAStringSet-method SWeePlite,array-method SWeePlite,BString-method SWeePlite,BStringSet-method SWeePlite,character-method SWeePlite,dgCMatrix-method SWeePlite,DNAStringSet-method SWeePlite,integer-method SWeePlite,matrix-method SWeePlite,RNAStringSet-method