NEWS

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rSWeeP 1.3.2 (2020-11-24)

• baseMatrix error fix

rSWeeP 0.99.12 (2020-02-08)

• 2000+ sequences multifasta error removed

rSWeeP 0.99.7 (2020-01-21)

• Warning removed

rSWeeP 0.99.6 (2020-01-21)

• Error removed

rSWeeP 0.99.5 (2020-01-21)

• An even bigger FASTA has been used in the "Quick Start" section

rSWeeP 0.99.4 (2020-01-21)

• The package no longer relies on seqinr, now operates only with Biostrings functions and variables
• The Title and the Description have been updated to be more precise in describing the package.
• Despcritional comments have been added to all codes.
• The sWeeP functions now accept AAStringset as well file names as a valid entry
• The sWeeP function now uses an S4 Generic and S4 methods
• The user input variable baseMatrix has now a validating step on the code
• The sWeeP function now uses Biostrings::readAAStringSet for FASTA input.
• All functions now only use message(...) to communicate with users.
• All 1:length(...) instances have been replaced with seq_len
• On all codes, the function tidy_source() from the formatR package has been used to standardizing code formating.
• All operations that do not affect have to the package working been removed.
• Some functions and variables naming has been changed aiming to follow the lowerCamelCase convention (the sWeeP function still as it's, due it is the method initials)
• aa2int() has been replaced by a vector inside the aa2num2()
• The data set datastring has been removed.
• fas2mat receives now an AAStringSet as entry
• Instead of reading the R object datastring and writing it as a FASTA file, a FASTA file has been included directly in inst/extdata/
• A bigger FASTA has been used in the "Quick Start" section
• All non-R package source files have been removed

rSWeeP 0.99.0 (2019-05-15)

• Submitted to Bioconductor