Package: rGenomeTracks 1.13.0

Omar Elashkar

rGenomeTracks: Integerated visualization of epigenomic data

rGenomeTracks package leverages the power of pyGenomeTracks software with the interactivity of R. pyGenomeTracks is a python software that offers robust method for visualizing epigenetic data files like narrowPeak, Hic matrix, TADs and arcs, however though, here is no way currently to use it within R interactive session. rGenomeTracks wrapped the whole functionality of pyGenomeTracks with additional utilites to make to more pleasant for R users.

Authors:Omar Elashkar [aut, cre]

rGenomeTracks_1.13.0.tar.gz
rGenomeTracks_1.13.0.zip(r-4.5)rGenomeTracks_1.13.0.zip(r-4.4)rGenomeTracks_1.13.0.zip(r-4.3)
rGenomeTracks_1.13.0.tgz(r-4.4-any)rGenomeTracks_1.13.0.tgz(r-4.3-any)
rGenomeTracks_1.13.0.tar.gz(r-4.5-noble)rGenomeTracks_1.13.0.tar.gz(r-4.4-noble)
rGenomeTracks_1.13.0.tgz(r-4.4-emscripten)rGenomeTracks_1.13.0.tgz(r-4.3-emscripten)
rGenomeTracks.pdf |rGenomeTracks.html
rGenomeTracks/json (API)

# Install 'rGenomeTracks' in R:
install.packages('rGenomeTracks', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:rGenomeTracks-1.13.0(bioc 3.21)rGenomeTracks-1.12.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwarehicvisualization

3.30 score 2 scripts 162 downloads 18 exports 74 dependencies

Last updated 3 months agofrom:c6e4fb57bb. Checks:1 OK, 6 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKDec 30 2024
R-4.5-winNOTEDec 31 2024
R-4.5-linuxNOTEDec 30 2024
R-4.4-winNOTEDec 31 2024
R-4.4-macNOTEDec 30 2024
R-4.3-winNOTEDec 31 2024
R-4.3-macNOTEDec 30 2024

Exports:epilogos_jsoninstall_pyGenomeTracksplot_gtrackstrack_bedtrack_bedgraphtrack_bedgraph_matrixtrack_bigwigtrack_domainstrack_epilogostrack_gtftrack_hic_matrixtrack_hlinestrack_linkstrack_narrow_peaktrack_scalebartrack_spacertrack_vlinestrack_x_axis

Dependencies:AnnotationDbiAnnotationHubaskpassBiobaseBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobbmpcachemclicpp11crayoncurlDBIdbplyrdigestdownloaderdplyrfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDataglueherehttrigraphimagerIRangesjpegjsonliteKEGGRESTlatticelifecyclemagrittrMatrixmemoisemimeopensslpillarpkgconfigplogrpngpurrrR6rappdirsRcppRcppTOMLreadbitmapreticulaterGenomeTracksDatarlangrprojrootRSQLiteS4VectorsstringistringrsystibbletidyrtidyselecttiffUCSC.utilsutf8vctrswithrXVectoryaml

rGenomeTracks

Rendered fromrGenomeTracks.Rmdusingknitr::rmarkdownon Dec 30 2024.

Last update: 2021-08-23
Started: 2021-07-15