{
  "_id": "6a494cacf6c47c4419499791",
  "Package": "rGenomeTracks",
  "Title": "Integerated visualization of epigenomic data",
  "Version": "1.19.0",
  "Authors@R": "person(given = \"Omar\",\nfamily = \"Elashkar\",\nrole = c(\"aut\", \"cre\"),\nemail = \"omar.i.elashkar@gmail.com\",\ncomment = c(ORCID = \"0000-0002-5505-778X\"))",
  "Description": "rGenomeTracks package leverages the power of\npyGenomeTracks software with the interactivity of R.\npyGenomeTracks is a python software that offers robust method\nfor visualizing epigenetic data files like narrowPeak, Hic\nmatrix, TADs and arcs, however though, here is no way currently\nto use it within R interactive session. rGenomeTracks wrapped\nthe whole functionality of pyGenomeTracks with additional\nutilites to make to more pleasant for R users.",
  "Config/reticulate": "list( packages = list( list(package =\n\"pyGenomeTracks\", version = \"3.6\") ) )",
  "License": "GPL-3",
  "SystemRequirements": "pyGenomeTracks (prefered to use\ninstall_pyGenomeTracks())",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.1.1",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "biocViews": "Software, HiC, Visualization",
  "Config/pak/sysreqs": "libfftw3-dev libglpk-dev libicu-dev libjpeg-dev\nlibpng-dev libtiff-dev libxml2-dev libssl-dev python3\nlibx11-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:56:52 UTC",
  "RemoteUrl": "https://github.com/bioc/rGenomeTracks",
  "RemoteRef": "HEAD",
  "RemoteSha": "8fe422af4e24be6f2ceb91d646ee32e2d69deddf",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-03 20:10:19 UTC",
    "User": "root"
  },
  "Author": "Omar Elashkar [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-5505-778X>)",
  "Maintainer": "Omar Elashkar <omar.i.elashkar@gmail.com>",
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  "_type": "src",
  "_file": "rGenomeTracks_1.19.0.tar.gz",
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  "_expires": "2026-10-12T18:10:50.000Z",
  "_created": "2026-07-03T20:10:19.000Z",
  "_published": "2026-07-04T18:10:52.002Z",
  "_bioccheck": {
    "error": 0,
    "warning": 1,
    "note": 12
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  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28681261778",
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  "_upstream": "https://github.com/bioc/rGenomeTracks",
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    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777381012
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  "_maintainer": {
    "name": "Omar Elashkar",
    "email": "omar.i.elashkar@gmail.com",
    "orcid": "0000-0002-5505-778X"
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      "role": "Depends"
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      "package": "imager",
      "role": "Imports"
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    {
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      "package": "methods",
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      "package": "rGenomeTracksData",
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      "package": "rmarkdown",
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  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
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  ],
  "_tags": [],
  "_bioc": [
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      "branch": "devel",
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      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.18.0",
      "bioc": "3.23"
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  "_topics": [
    "software",
    "hic",
    "visualization"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_searchresults": 5,
  "_rbuild": "4.6.1",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/rGenomeTracks.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "epilogos_json",
    "install_pyGenomeTracks",
    "plot_gtracks",
    "track_bed",
    "track_bedgraph",
    "track_bedgraph_matrix",
    "track_bigwig",
    "track_domains",
    "track_epilogos",
    "track_gtf",
    "track_hic_matrix",
    "track_hlines",
    "track_links",
    "track_narrow_peak",
    "track_scalebar",
    "track_spacer",
    "track_vlines",
    "track_x_axis"
  ],
  "_help": [
    {
      "page": "plus-genome_track-genome_track-method",
      "title": "Adding genome_track Objects",
      "topics": [
        "+,genome_track,genome_track-method"
      ]
    },
    {
      "page": "epilogos_json",
      "title": "Generate epilogo json configuration file",
      "topics": [
        "epilogos_json"
      ]
    },
    {
      "page": "install_pyGenomeTracks",
      "title": "Install pyGenomeTracks Dependency",
      "topics": [
        "install_pyGenomeTracks"
      ]
    },
    {
      "page": "plot_gtracks",
      "title": "Plotting genomic tracks",
      "topics": [
        "genome_track",
        "plot_gtracks",
        "plot_gtracks,",
        "plot_gtracks,genome_track-method"
      ]
    },
    {
      "page": "track_bed",
      "title": "Generate bed track",
      "topics": [
        "track_bed"
      ]
    },
    {
      "page": "track_bedgraph",
      "title": "Generate bedgraph track",
      "topics": [
        "track_bedgraph"
      ]
    },
    {
      "page": "track_bedgraph_matrix",
      "title": "Generate bedgraph matrix track",
      "topics": [
        "track_bedgraph_matrix"
      ]
    },
    {
      "page": "track_bigwig",
      "title": "Generate bigwig track",
      "topics": [
        "track_bigwig"
      ]
    },
    {
      "page": "track_domains",
      "title": "Generate domains track",
      "topics": [
        "track_domains"
      ]
    },
    {
      "page": "track_epilogos",
      "title": "Generate epilogos track",
      "topics": [
        "track_epilogos"
      ]
    },
    {
      "page": "track_gtf",
      "title": "Generate gtf track",
      "topics": [
        "track_gtf"
      ]
    },
    {
      "page": "track_hic_matrix",
      "title": "Generate HiC track",
      "topics": [
        "track_hic_matrix"
      ]
    },
    {
      "page": "track_hlines",
      "title": "Generate a track with horizontal lines",
      "topics": [
        "track_hlines"
      ]
    },
    {
      "page": "track_links",
      "title": "Generate links track",
      "topics": [
        "track_links"
      ]
    },
    {
      "page": "track_narrow_peak",
      "title": "Generate narrow peaks track",
      "topics": [
        "track_narrow_peak"
      ]
    },
    {
      "page": "track_scalebar",
      "title": "Generate scalebar track",
      "topics": [
        "track_scalebar"
      ]
    },
    {
      "page": "track_spacer",
      "title": "Generate spacing track",
      "topics": [
        "track_spacer"
      ]
    },
    {
      "page": "track_vlines",
      "title": "Overlay vertical lines from a bed file",
      "topics": [
        "track_vlines"
      ]
    },
    {
      "page": "track_x_axis",
      "title": "Specify x_axis option for genome_track.",
      "topics": [
        "track_x_axis"
      ]
    }
  ],
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    "AnnotationHub",
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