Overview | System requirements | Quick start: build and query a local database | Multiple queries and custom output | Threads and parallel searches | Temporary files and troubleshooting | Prebuilt NCBI databases | Remote searches | Session information
Package: rBLAST 1.9.4
Michael Hahsler
rBLAST: R Interface for the Basic Local Alignment Search Tool
Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) running locally to search genetic sequence data bases. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.
Authors:
rBLAST_1.9.4.tar.gz
rBLAST_1.9.4.zip(r-4.7-any)rBLAST_1.9.4.zip(r-4.6-any)rBLAST_1.9.4.zip(r-4.5-any)
rBLAST_1.9.4.tgz(r-4.6-any)rBLAST_1.9.4.tgz(r-4.5-any)
rBLAST_1.9.4.tar.gz(r-4.7-any)rBLAST_1.9.4.tar.gz(r-4.6-any)
rBLAST_1.9.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rBLAST/json (API)
| # Install 'rBLAST' in R: |
| install.packages('rBLAST', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mhahsler/rblast/issues
On BioConductor:rBLAST-1.9.4(bioc 3.24)rBLAST-1.8.0(bioc 3.23)
geneticssequencingsequencematchingalignmentmultiplesequencealignmentdataimportbioconductorbioinformaticsblast-search
Last updated from:6e6073d0e9. Checks:1 NOTE, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 137 | ||
| linux-devel | OK | 230 | ||
| source / vignettes | OK | 198 | ||
| linux-release | OK | 212 | ||
| macos-release | OK | 144 | ||
| macos-oldrel | OK | 106 | ||
| windows-devel | OK | 115 | ||
| windows-release | OK | 107 | ||
| windows-oldrel | OK | 114 | ||
| wasm-release | OK | 93 |
Exports:blastblast_db_cacheblast_db_getblast_helphas_blastmakeblastdb
Dependencies:askpassBiocFileCacheBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfastmapfilelockgenericsgluehttr2IRangeslifecyclemagrittrmemoiseopensslpillarpkgconfigpurrrR6rlangRSQLiteS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswithrXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Basic Local Alignment Search Tool (BLAST) | BLAST blast blast_help has_blast predict.BLAST print.BLAST |
| Cache BLAST Database Archives | blast_db_cache blast_db_get |
| Create BLAST Databases | makeblastdb |
