Package: rBLAST 1.3.0

Michael Hahsler

rBLAST: R Interface for the Basic Local Alignment Search Tool

Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) to search genetic sequence data bases. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.

Authors:Michael Hahsler [aut, cre], Nagar Anurag [aut]

rBLAST_1.3.0.tar.gz
rBLAST_1.3.0.zip(r-4.5)rBLAST_1.3.0.zip(r-4.4)rBLAST_1.3.0.zip(r-4.3)
rBLAST_1.3.0.tgz(r-4.4-any)rBLAST_1.3.0.tgz(r-4.3-any)
rBLAST_1.3.0.tar.gz(r-4.5-noble)rBLAST_1.3.0.tar.gz(r-4.4-noble)
rBLAST_1.3.0.tgz(r-4.4-emscripten)rBLAST_1.3.0.tgz(r-4.3-emscripten)
rBLAST.pdf |rBLAST.html✨
rBLAST/json (API)
NEWS

# Install 'rBLAST' in R:
install.packages('rBLAST', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mhahsler/rblast/issues

On BioConductor:rBLAST-1.3.0(bioc 3.21)rBLAST-1.2.0(bioc 3.20)

geneticssequencingsequencematchingalignmentdataimportbioconductorbioinformaticsblast-search

8.08 score 105 stars 108 scripts 286 downloads 6 exports 50 dependencies

Last updated 21 days agofrom:39a607f2e8. Checks:OK: 5 WARNING: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winOKOct 31 2024
R-4.5-linuxOKOct 31 2024
R-4.4-winOKOct 31 2024
R-4.4-macWARNINGOct 31 2024
R-4.3-winOKOct 31 2024
R-4.3-macWARNINGOct 31 2024

Exports:blastblast_db_cacheblast_db_getblast_helphas_blastmakeblastdb

Dependencies:askpassBiocFileCacheBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrdplyrfansifastmapfilelockgenericsGenomeInfoDbGenomeInfoDbDatagluehttrIRangesjsonlitelifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrpurrrR6rlangRSQLiteS4VectorsstringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVectorzlibbioc

rBLAST: R Interface for the Basic Local Alignment Search Tool

Michael Hahsler and Anurag Nagar

Rendered fromblast.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2024-04-09
Started: 2024-03-22

Readme and manuals

Help Manual

Help pageTopics
Basic Local Alignment Search Tool (BLAST)BLAST blast blast_help has_blast predict.BLAST print.BLAST
Manage BLAST Database Downloads using BioCFileCacheblast_db_cache blast_db_get
Create BLAST Databasesmakeblastdb