Package: projectR 1.23.0
Genevieve Stein-OBrien
projectR: Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering
Functions for the projection of data into the spaces defined by PCA, CoGAPS, NMF, correlation, and clustering.
Authors:
projectR_1.23.0.tar.gz
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projectR.pdf |projectR.html✨
projectR/json (API)
| # Install 'projectR' in R: |
| install.packages('projectR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/genesofeve/projectr/issues
- AP.RNAseq6l3c3t - CoGAPS patterns and genes weights for p.RNAseq6l3c3t
- CR.RNAseq6l3c3t - CogapsResult object for p.RNAseq6l3c3t
- cr_microglial - CogapsResult object for microglial_counts
- glial_counts - Log-normalized count data from astrocytes and oligodendrocytes in the p6 mouse cortex.
- map.ESepiGen4c1l - RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
- map.RNAseq6l3c3t - RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
- microglial_counts - Log-normalized count data from microglial cells in the p6 mouse cortex.
- multivariateAnalysisR_seurat_test - Truncated Seurat Object with latent space projection done to unspecified cells in different stages for multivariateAnalysisR analysis
- p.ESepiGen4c1l - RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
- p.RNAseq6l3c3t - RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
- pd.ESepiGen4c1l - RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
- pd.RNAseq6l3c3t - RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
- retinal_patterns - CoGAPS patterns learned from the developing mouse retina.
On BioConductor:projectR-1.23.0(bioc 3.21)projectR-1.22.0(bioc 3.20)
functionalpredictiongeneregulationbiologicalquestionsoftware
Last updated 2 months agofrom:6cc9b37b28. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 27 2024 |
| R-4.5-win | NOTE | Nov 27 2024 |
| R-4.5-linux | NOTE | Nov 27 2024 |
| R-4.4-win | NOTE | Nov 27 2024 |
| R-4.4-mac | NOTE | Nov 27 2024 |
| R-4.3-win | NOTE | Nov 27 2024 |
| R-4.3-mac | NOTE | Nov 27 2024 |
Exports:alluvialMataucMatcluster2patternclusterPlotRcorrelateRgeneMatchRgetTSNEgetUMAPintersectoRmultivariateAnalysisRpdVolcanoplotConfidenceIntervalsplotVolcanoprojectionDriveRprojectRrotatoR
Dependencies:askpassbabelgeneBHBiobaseBiocGenericsBiocManagerBiocParallelbitopscaToolscliclustercodetoolscolorspacecowplotcpp11data.tabledigestdoParalleldplyrfansifarverfastmatchfgseaforeachformatRfutile.loggerfutile.optionsgenericsggalluvialggplot2ggrepelgluegplotsgridBasegridExtragtablegtoolshereisobanditeratorsjsonliteKernSmoothlabelinglambda.rlatticelazyevallifecyclelimmamagrittrMASSMatrixMatrixModelsmgcvmsigdbrmunsellnlmeNMFopensslpillarpkgconfigplyrpngpurrrR6rappdirsRColorBrewerRcppRcppEigenRcppTOMLregistryreshape2reticulaterlangrngtoolsROCRrprojrootRSpectrascalessnowstatmodstringistringrsystibbletidyrtidyselecttsneumaputf8vctrsviridisviridisLitewithr
