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Stein-O'Brien", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Getting started with projectR", "Installation Instructions", "Methods", "The base projectR function", "Input Arguments", "Output", "PCA projection", "Obtaining PCs to project.", "Projecting prcomp objects", "NMF projection", "Obtaining CoGAPS patterns to project.", "Projecting CoGAPS objects", "Clustering projection", "cluster2pattern", "intersectoR", "Correlation based projection", "correlateR", "Obtaining and visualizing correlateR objects.", "Projecting correlateR objects.", "Differential features identification.", "projectionDriveR", "Identifying differential features associated with learned patterns", "plotConfidenceIntervals", "Input", "Customize plotting of confidence intervals", "Customize volcano plot and run FGSEA", "Comparing differential uses of patterns across different clusters", "References" ], "created": "2017-10-05 14:03:05", "modified": "2024-02-21 20:08:03", "commits": 39 } ], "_score": 8.379939722801916, "_indexed": true, "_nocasepkg": "projectr", "_universes": [ "bioc", "genesofeve" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.29.0", "date": "2026-06-04T07:11:45.000Z", "distro": "noble", "commit": "c02488b01a99ba3e5a67de9f5257657e6b2501dc", "fileid": "619f11a7fee3ad0532a04f17bf686b9ea03cd1e16fc7fc69ebbe6aa35a38bf9b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936289238" }, { "r": "4.6.0", "os": "linux", "version": "1.29.0", "date": "2026-06-04T07:12:31.000Z", "distro": "noble", "commit": "c02488b01a99ba3e5a67de9f5257657e6b2501dc", "fileid": "0c3c721cd7a03cb4a3686ba50b9658803ce0a0ded3339b42fad2b0c4884838a3", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936289238" }, { "r": "4.5.3", "os": "mac", "version": "1.29.0", "date": "2026-06-04T07:09:37.000Z", "commit": "c02488b01a99ba3e5a67de9f5257657e6b2501dc", "fileid": "47fa689a245444690e78444fc110751f3e60adf7aa6370cf1807cfbb5f1f9038", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936289238" }, { "r": "4.6.0", "os": "mac", "version": "1.29.0", "date": "2026-06-04T07:09:37.000Z", "commit": "c02488b01a99ba3e5a67de9f5257657e6b2501dc", "fileid": "2dba4e010f6dd285f8c2819a0478249029a43967bb9fe7f9fd11998c46c2463a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936289238" }, { "r": "4.6.0", "os": "wasm", "version": "1.29.0", "date": "2026-06-04T07:10:59.000Z", "commit": "c02488b01a99ba3e5a67de9f5257657e6b2501dc", "fileid": "00e82721cda8e8db10c02d73aea453105f783f499a2b4a086a0a1ba0c901180f", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936289238" }, { "r": "4.7.0", "os": "win", "version": "1.29.0", "date": "2026-06-04T07:09:32.000Z", "commit": "c02488b01a99ba3e5a67de9f5257657e6b2501dc", "fileid": "36343d1cab120335c3dffacd9c880d14390906485206cfe143f2be5fe6608b7c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936289238" }, { "r": "4.5.3", "os": "win", "version": "1.29.0", "date": "2026-06-04T07:09:16.000Z", "commit": "c02488b01a99ba3e5a67de9f5257657e6b2501dc", "fileid": "0cac7691a3dfc93d03c458a6f6d3ec92797e342686d46ad18273db13d83ccea5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936289238" }, { "r": "4.6.0", "os": "win", "version": "1.29.0", "date": "2026-06-04T07:09:23.000Z", "commit": "c02488b01a99ba3e5a67de9f5257657e6b2501dc", "fileid": "f682b5addfb4a4793c48b85926377ef15e0d6abea6f983e1c11b21e61b436436", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26936289238" } ] }