Introduction | Example | References
Package: profileScoreDist 1.41.0
Paal O. Westermark
profileScoreDist: Profile score distributions
Regularization and score distributions for position count matrices.
Authors:
profileScoreDist_1.41.0.tar.gz
profileScoreDist_1.41.0.zip(r-4.7)profileScoreDist_1.41.0.zip(r-4.6)profileScoreDist_1.41.0.zip(r-4.5)
profileScoreDist_1.41.0.tgz(r-4.6-x86_64)profileScoreDist_1.41.0.tgz(r-4.6-arm64)profileScoreDist_1.41.0.tgz(r-4.5-x86_64)profileScoreDist_1.41.0.tgz(r-4.5-arm64)
profileScoreDist_1.41.0.tar.gz(r-4.7-arm64)profileScoreDist_1.41.0.tar.gz(r-4.7-x86_64)profileScoreDist_1.41.0.tar.gz(r-4.6-arm64)profileScoreDist_1.41.0.tar.gz(r-4.6-x86_64)
profileScoreDist_1.41.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
profileScoreDist/json (API)
| # Install 'profileScoreDist' in R: |
| install.packages('profileScoreDist', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- INR - The position count matrix for INR.
On BioConductor:profileScoreDist-1.41.0(bioc 3.24)profileScoreDist-1.40.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
softwaregeneregulationstatisticalmethodcpp
Last updated from:15c239f4d1. Checks:1 ERROR, 13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 166 | ||
| linux-devel-arm64 | OK | 152 | ||
| linux-devel-x86_64 | OK | 210 | ||
| source / vignettes | OK | 192 | ||
| linux-release-arm64 | OK | 153 | ||
| linux-release-x86_64 | OK | 168 | ||
| macos-release-arm64 | OK | 97 | ||
| macos-release-x86_64 | OK | 214 | ||
| macos-oldrel-arm64 | OK | 105 | ||
| macos-oldrel-x86_64 | OK | 193 | ||
| windows-devel | OK | 123 | ||
| windows-release | OK | 188 | ||
| windows-oldrel | OK | 110 | ||
| wasm-release | OK | 124 |
Exports:backgroundDistcomputeScoreDistplotDistProfileDistregularizeMatrixscoreDistCutoffssignalDist
Dependencies:BiocGenericsgenericsRcpp
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Background distribution. | backgroundDist |
| Compute exact position weight/count matrix score distribution. | computeScoreDist |
| The position count matrix for INR. | INR |
| Plot background and signal distributions. | plotDist |
| ProfileDist | backgroundDist,ProfileDist-method plotDist,ProfileDist-method ProfileDist ProfileDist-class score,ProfileDist-method show,ProfileDist-method signalDist,ProfileDist-method |
| Careful regularization (pseudocount addition) to a position count matrix. | regularizeMatrix |
| False discovery rate and power for PWM Score distributions. | scoreDistCutoffs |
| Signal distribution. | signalDist |