Package: profileScoreDist 1.35.0

Paal O. Westermark

profileScoreDist: Profile score distributions

Regularization and score distributions for position count matrices.

Authors:Paal O. Westermark

profileScoreDist_1.35.0.tar.gz
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profileScoreDist.pdf |profileScoreDist.html✨
profileScoreDist/json (API)
NEWS

# Install 'profileScoreDist' in R:
install.packages('profileScoreDist', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • INR - The position count matrix for INR.

On BioConductor:profileScoreDist-1.35.0(bioc 3.21)profileScoreDist-1.34.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwaregeneregulationstatisticalmethodcpp

3.30 score 1 scripts 216 downloads 1 mentions 7 exports 3 dependencies

Last updated 4 months agofrom:f562e3f8e3. Checks:11 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 26 2025
R-4.5-win-x86_64OKJan 26 2025
R-4.5-mac-x86_64OKJan 26 2025
R-4.5-mac-aarch64OKJan 26 2025
R-4.5-linux-x86_64OKJan 26 2025
R-4.4-win-x86_64OKJan 26 2025
R-4.4-mac-x86_64OKJan 26 2025
R-4.4-mac-aarch64OKJan 26 2025
R-4.3-win-x86_64OKJan 26 2025
R-4.3-mac-x86_64OKJan 26 2025
R-4.3-mac-aarch64OKJan 26 2025

Exports:backgroundDistcomputeScoreDistplotDistProfileDistregularizeMatrixscoreDistCutoffssignalDist

Dependencies:BiocGenericsgenericsRcpp

Using profileScoreDist

| Pål O. Westermark | Carité University Medicine Berlin

Rendered fromprofileScoreDist-vignette.Rmdusingknitr::rmarkdownon Jan 26 2025.

Last update: 2015-12-11
Started: 2015-12-11

Readme and manuals

Help Manual

Help pageTopics
Background distribution.backgroundDist
Compute exact position weight/count matrix score distribution.computeScoreDist
The position count matrix for INR.INR
Plot background and signal distributions.plotDist
ProfileDistbackgroundDist,ProfileDist-method plotDist,ProfileDist-method ProfileDist ProfileDist-class score,ProfileDist-method show,ProfileDist-method signalDist,ProfileDist-method
Careful regularization (pseudocount addition) to a position count matrix.regularizeMatrix
False discovery rate and power for PWM Score distributions.scoreDistCutoffs
Signal distribution.signalDist