Package: profileScoreDist 1.41.0

Paal O. Westermark

profileScoreDist: Profile score distributions

Regularization and score distributions for position count matrices.

Authors:Paal O. Westermark

profileScoreDist_1.41.0.tar.gz
profileScoreDist_1.41.0.zip(r-4.7)profileScoreDist_1.41.0.zip(r-4.6)profileScoreDist_1.41.0.zip(r-4.5)
profileScoreDist_1.41.0.tgz(r-4.6-x86_64)profileScoreDist_1.41.0.tgz(r-4.6-arm64)profileScoreDist_1.41.0.tgz(r-4.5-x86_64)profileScoreDist_1.41.0.tgz(r-4.5-arm64)
profileScoreDist_1.41.0.tar.gz(r-4.7-arm64)profileScoreDist_1.41.0.tar.gz(r-4.7-x86_64)profileScoreDist_1.41.0.tar.gz(r-4.6-arm64)profileScoreDist_1.41.0.tar.gz(r-4.6-x86_64)
profileScoreDist_1.41.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
profileScoreDist/json (API)
NEWS

# Install 'profileScoreDist' in R:
install.packages('profileScoreDist', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • INR - The position count matrix for INR.

On BioConductor:profileScoreDist-1.41.0(bioc 3.24)profileScoreDist-1.40.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwaregeneregulationstatisticalmethodcpp

3.30 score 4 scripts 303 downloads 1 mentions 7 exports 3 dependencies

Last updated from:15c239f4d1. Checks:1 ERROR, 13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR166
linux-devel-arm64OK181
linux-devel-x86_64OK170
source / vignettesOK200
linux-release-arm64OK163
linux-release-x86_64OK177
macos-release-arm64OK129
macos-release-x86_64OK198
macos-oldrel-arm64OK107
macos-oldrel-x86_64OK340
windows-develOK125
windows-releaseOK185
windows-oldrelOK114
wasm-releaseOK135

Exports:backgroundDistcomputeScoreDistplotDistProfileDistregularizeMatrixscoreDistCutoffssignalDist

Dependencies:BiocGenericsgenericsRcpp

Using profileScoreDist

| Pål O. Westermark | Carité University Medicine Berlin

Rendered fromprofileScoreDist-vignette.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2015-12-11
Started: 2015-12-11

Readme and manuals

Help Manual

Help pageTopics
Background distribution.backgroundDist
Compute exact position weight/count matrix score distribution.computeScoreDist
The position count matrix for INR.INR
Plot background and signal distributions.plotDist
ProfileDistbackgroundDist,ProfileDist-method plotDist,ProfileDist-method ProfileDist ProfileDist-class score,ProfileDist-method show,ProfileDist-method signalDist,ProfileDist-method
Careful regularization (pseudocount addition) to a position count matrix.regularizeMatrix
False discovery rate and power for PWM Score distributions.scoreDistCutoffs
Signal distribution.signalDist