Package: profileScoreDist 1.33.0
Paal O. Westermark
profileScoreDist: Profile score distributions
Regularization and score distributions for position count matrices.
Authors:
profileScoreDist_1.33.0.tar.gz
profileScoreDist_1.33.0.zip(r-4.5)profileScoreDist_1.33.0.zip(r-4.4)profileScoreDist_1.33.0.zip(r-4.3)
profileScoreDist_1.33.0.tgz(r-4.4-arm64)profileScoreDist_1.33.0.tgz(r-4.4-x86_64)profileScoreDist_1.33.0.tgz(r-4.3-arm64)profileScoreDist_1.33.0.tgz(r-4.3-x86_64)
profileScoreDist_1.33.0.tar.gz(r-4.5-noble)profileScoreDist_1.33.0.tar.gz(r-4.4-noble)
profileScoreDist_1.33.0.tgz(r-4.4-emscripten)profileScoreDist_1.33.0.tgz(r-4.3-emscripten)
profileScoreDist.pdf |profileScoreDist.html✨
profileScoreDist/json (API)
NEWS
| # Install 'profileScoreDist' in R: |
| install.packages('profileScoreDist', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- INR - The position count matrix for INR.
On BioConductor:profileScoreDist-1.33.0(bioc 3.20)profileScoreDist-1.32.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:d842805587
Exports:backgroundDistcomputeScoreDistplotDistProfileDistregularizeMatrixscoreDistCutoffssignalDist
Dependencies:BiocGenericsRcpp
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Background distribution. | backgroundDist |
| Compute exact position weight/count matrix score distribution. | computeScoreDist |
| The position count matrix for INR. | INR |
| Plot background and signal distributions. | plotDist |
| ProfileDist | backgroundDist,ProfileDist-method plotDist,ProfileDist-method ProfileDist ProfileDist-class score,ProfileDist-method show,ProfileDist-method signalDist,ProfileDist-method |
| Careful regularization (pseudocount addition) to a position count matrix. | regularizeMatrix |
| False discovery rate and power for PWM Score distributions. | scoreDistCutoffs |
| Signal distribution. | signalDist |